Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2105160 87.8 2e-15 seq1359687 87.8 2e-15 seq1113538 87.8 2e-15 seq235414 78.8 8e-13 seq99465 78.8 8e-13 seq10818 77.0 3e-12 seq2661876 75.2 1e-11 seq2412952 75.2 1e-11 seq2206235 75.2 1e-11 seq1230552 75.2 1e-11 seq1205427 75.2 1e-11 seq8458 75.2 1e-11 seq7414 75.2 1e-11 >seq2105160 Length=202 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||||| |||| Sbjct 26 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTG 85 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || |||||||||||||| ||| |||| ||||||| Sbjct 86 CTCGACGGGTGGGTCTCGCAGTCAAGCTCCCTTCTGCCTTTGCACT 131 >seq1359687 Length=200 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||||| |||| Sbjct 3 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTG 62 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||||||||||| Sbjct 63 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCATTGCACT 108 >seq1113538 Length=200 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||||| || |||||| |||| Sbjct 142 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTATGGCCGACTTTCGTCCCTG 83 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 82 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 37 >seq235414 Length=137793 Score = 78.8 bits (86), Expect = 8e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||| | |||| Sbjct 48792 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTTGTCCCTG 48733 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | || ||| ||||||||||| ||| |||| ||||||| Sbjct 48732 CTCAACGGGTGGGTCTTGCAGTCAAGCCCCCTTCTGCCTTTGCACT 48687 >seq99465 Length=415364 Score = 78.8 bits (86), Expect = 8e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | ||| |||||||||| | || |||||| |||| Sbjct 323916 GTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTG 323857 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | || ||| |||||||||| ||| | || ||||||| Sbjct 323856 CTCAACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTTCCTTTGCACT 323811 >seq10818 Length=866912 Score = 77.0 bits (84), Expect = 3e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| |||| ||| |||||||||| | || ||||| |||| Sbjct 813312 GTTGAGCGATGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCCGAATTTCGTCCCTG 813253 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| || ||| |||||||||| Sbjct 813252 CTCGATGGGTGGGTCTTGCAGTCAAGC 813226 >seq2661876 Length=206 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 189 GTTGAGCGAGAGCCCTTCCACGCGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 130 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | || | |||| |||||| ||| ||||| ||||| Sbjct 129 TTCGACCAGTGAGTCTCACAGTCAGGCCGGCTTAGACCATT 89 >seq2412952 Length=204 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | ||| ||||||||||||| || |||||| ||| Sbjct 74 GTTGAGCGAGAGCCCTTCCACGCGGGACCCCCGGATCACTATGGCCGACTTTCGTCTCTG 133 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | || | |||| |||||| || ||||| ||||| Sbjct 134 TTCGACCAGTGAGTCTCACAGTCAGGCAGGCTTAGACCATT 174 >seq2206235 Length=203 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || ||||||| ||| Sbjct 50 GTTGAGCGAGAGCCCTTCCACGCGGGACTCCCGGATCACTATGGCCGACTTTCGCCTCTG 109 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | || | |||| |||||| || ||||| ||||| Sbjct 110 TTCGACCAGTGAGTCTCACAGTCAGGCAGGCTTAGACCATT 150 >seq1230552 Length=200 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| ||| || ||||||||||||| || |||||| ||| Sbjct 78 GTTGAGCGAGAGCCCTTCCACGCAGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 137 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | || | |||| |||||| || ||||| ||||| Sbjct 138 TTCGACCAGTGAGTCTCACAGTCAGGCAGGCTTAGACCATT 178 >seq1205427 Length=200 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || ||||||| ||| Sbjct 53 GTTGAGCGAGAGCCCTTCCACGCGGGACTCCCGGATCACTATGGCCGGCTTTCGTCTCTG 112 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | || | |||| |||||| || ||||| ||||| Sbjct 113 TTCGACCAGTGAGTCTCACAGTCAGGCAGGCTTAGACCATT 153 >seq8458 Length=536262 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| || | || |||||||||| | | |||| | |||| Sbjct 232391 GTTGAGCGATGGCCCTTCCACTCGGCACTGTCGGATCACTAAGGCTGACTTTGGTCCCTG 232332 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 232331 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 232286 >seq7414 Length=583494 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| |||||||||||||||| || | |||| || ||||||| | | |||||| ||| Sbjct 306372 GTTAAGCGATGGCCCTTCCACTCGGCACCATCGAATCACTAAGGTCGACTTTCGTCCCTA 306313 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 306312 CTCGACAGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 306267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454086790964