Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1634679 104 3e-20 seq1558990 102 1e-19 seq759485 100 4e-19 seq1318132 96.9 5e-18 seq20430 96.9 5e-18 seq1453685 91.5 2e-16 seq722538 89.7 7e-16 seq316335 89.7 7e-16 seq1121001 87.8 2e-15 seq658969 87.8 2e-15 seq1590017 84.2 3e-14 seq504398 82.4 1e-13 seq992759 80.6 4e-13 seq285754 80.6 4e-13 seq1041777 77.0 4e-12 seq239023 75.2 2e-11 seq1330559 73.4 5e-11 seq835859 73.4 5e-11 >seq1634679 Length=467642 Score = 104 bits (114), Expect = 3e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||| ||||| |||||||||| ||||||| | |||| | Sbjct 336289 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 336348 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||| ||||||||||||| | |||||||||||||| Sbjct 336349 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTT 336390 >seq1558990 Length=145297 Score = 102 bits (112), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 16/223 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| |||||| ||| ||| | || Sbjct 103557 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCGGCTTGGCAGAGTCC 103498 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | |||||||| |||| ||||||| | | || | | ||| | | ||| | ||| | Sbjct 103497 TCTGTTTTTA-TAAATAGTCGCTACGCCCTGGTATGTGCCGCTTTC-CCAACCCAA-AGA 103441 Query 126 TCGTTCACCAGCAGTG---GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 | || || | ||| |||||||||||||||||| ||| |||||| |||| || Sbjct 103440 T--------AGGAGGGAGAGCA-CCCTTCTCCCGAAGTTAC-GGGTCATTTTTCCGAGTT 103391 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTG 225 |||| | || |||| | | | | || |||||| |||||| || Sbjct 103390 CCTTCAACATGGTTCTCTCAAGCACCCTAGTATACTCTACTTG 103348 >seq759485 Length=62889 Score = 100 bits (110), Expect = 4e-19 Identities = 171/249 (69%), Gaps = 27/249 (11%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||||| | ||| | ||| ||| Sbjct 37683 CTTAACCTTCCGACACTGGGCAGGCGTCAGCCCCCTTACATGGTCTTGT-GACTTTGCAG 37625 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||| ||||| ||||| |||| ||| ||| || ||| |||| || Sbjct 37624 AGACCTGTATTTTTGGTAAATAGTCACTTGGGCCTAGTCACTGTGACCTCCTA------- 37572 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || |||||||||||||||| |||||||||| ||||| || | Sbjct 37571 --------------AGGAG--GCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAG 37528 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGG 239 ||||||| | |||| | || | ||| |||||||||||| ||| |||||||| || Sbjct 37527 TTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGG 37470 Query 240 TTTACGGTA 248 ||| |||| Sbjct 37469 TTTTGGGTA 37461 >seq1318132 Length=193247 Score = 96.9 bits (106), Expect = 5e-18 Identities = 81/98 (83%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCCGAA 204 ||||||||| |||||||||||| ||||||||||| |||||| ||| |||| | | | Sbjct 106435 CCCTTCTCCTGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCAACATGTGTTCTCTCAAG 106376 Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||| |||||| |||||| || ||||||||||||||| Sbjct 106375 CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 106338 >seq20430 Length=416392 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| |||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 356516 GGCACCCGTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 356575 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || ||| ||||||||||||| | || |||||| |||| |||| Sbjct 356576 CACACCCCTAGGTATTCTCTACCTACCTACTTGTGTCAGTTTCGGGTA 356623 >seq1453685 Length=202813 Score = 91.5 bits (100), Expect = 2e-16 Identities = 84/104 (81%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| |||||||||||| ||| | |||| ||||||| | |||| | Sbjct 79338 GGCACCCCTTCTCCCAAAGTTACGGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 79397 Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACC-TGTGTCGGTTT 242 || | ||||| ||||||||||||| | ||| ||||||||||| Sbjct 79398 CGCGCCCCTTAGGTATTCTCTACCTACCTACCTTGTGTCGGTTT 79441 >seq722538 Length=4971 Score = 89.7 bits (98), Expect = 7e-16 Identities = 169/249 (68%), Gaps = 26/249 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||||| | ||| | ||| ||| Sbjct 4580 CTTAACCTTCCGGCAC-GGGCAGGCGTCAGCCCCCTTACATGGTCTTGT-GACTTTGCAG 4637 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||| ||||| ||||| |||| ||| ||| || ||| |||| || Sbjct 4638 AGACCTGTATTTTTGGTAAATAGTCACTTGGGCCTAGTCACTGTGACCTCCTA------- 4690 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || |||||||||||||||| |||||||||| ||||| || | Sbjct 4691 --------------AGGAG--GCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAG 4734 Query 181 TTCCTTA-ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| | |||| | || | || ||||||||||||| | ||||||||| | Sbjct 4735 TTCCTTAGAGAGAAGTTGTCTCGCGCCCCAAGGTATTCTCTACCTACCTACCTGTGTCAG 4794 Query 240 TTTACGGTA 248 ||| |||| Sbjct 4795 TTTCAGGTA 4803 >seq316335 Length=88360 Score = 89.7 bits (98), Expect = 7e-16 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||||||||||| |||||||||||| | ||||||| || ||||||| | |||| Sbjct 77124 AGAGGCACCCCTTCTCTCGAAGTTACGGG-CTATTTTGCTGAGTTCCTTAGAGAGAGTTG 77066 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | || | ||| ||||||||||||| | ||||||||||| || ||| Sbjct 77065 TCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGGTTTCGG 77017 >seq1121001 Length=2964 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||| |||||||||| ||||| || | ||||||| | |||| | Sbjct 299 GGCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAGTTCCTTAGAGAGAGTTGTCT 240 Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| ||| |||||||| ||||| |||| Sbjct 239 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 193 >seq658969 Length=977 Score = 87.8 bits (96), Expect = 2e-15 Identities = 179/254 (70%), Gaps = 33/254 (13%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACC-GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCA 59 |||| ||||||| ||| ||||| |||| ||||| |||||| ||||||| | ||| | Sbjct 285 CTTAACCTTCCAGCACTTGGGCAAGCGTTAGTCCCCATACAT-GACTTAC-GACTTTGTG 228 Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 ||||| ||||||| |||||||||||| ||| | | || || Sbjct 227 TAGACCTATGTTTTT-GTAAACAGTCGCC---------------CGAAGCCTA--AG-TC 187 Query 120 AACACGTCGTTCACC--AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 ||| | || | || || || ||||||||||||||||||||||||||| |||||| | Sbjct 186 AACT-GCCGACCTCCTAAGAAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG-C 131 Query 178 GAATTCC--TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGT 234 || |||| ||| | |||| | || | ||| |||||||||||| ||| |||||| Sbjct 130 GAGTTCCTTTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGT 73 Query 235 GTCGGTTTACGGTA 248 || ||||| |||| Sbjct 72 GTTGGTTTTGGGTA 59 >seq1590017 Length=787 Score = 84.2 bits (92), Expect = 3e-14 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||| |||| ||| | |||| ||||||| | |||| | Sbjct 68 GGCACCCCTTCTCCCAAAGTTACAGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 127 Query 201 CGAACGCCTTA-GTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248 || ||| | ||||||||||||| || |||||||||||||| |||| Sbjct 128 CGCGGCCCTAAGGTATTCTCTACCTACCCTACCTGTGTCGGTTTCGGGTA 177 >seq504398 Length=1374 Score = 82.4 bits (90), Expect = 1e-13 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||| |||| ||| | |||| ||||||| | |||| | Sbjct 1053 GGCACCCCTTCTCCCAAAGTTACAGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 1112 Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| ||| |||||||| ||||| |||| Sbjct 1113 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 1159 >seq992759 Length=611 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/109 (79%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 144 ACCCCTTCTCCCGAA-GTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC-C 201 ||||||||||||||| |||||||||| ||||||| || ||||||| | |||| | | Sbjct 330 ACCCCTTCTCCCGAAAGTTACGGGGCTATTTTGC-GAGTTCCTTAGAGAGAGTTTGTCTC 272 Query 202 GAACGCCTTA--GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||||| ||||||||||||| | |||||||||| ||| |||| Sbjct 271 GCGCCCCTTAAGGTATTCTCTACCTACCTACCTGTGTCGATTTCGGGTA 223 >seq285754 Length=104627 Score = 80.6 bits (88), Expect = 4e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 154 CCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGT 213 ||||||||||||||| |||||||||| ||||||| | |||| | | | ||| || Sbjct 41033 CCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTTGCGCCCCTAGGT 40974 Query 214 ATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||||||||||| | |||||||||||||| Sbjct 40973 ATTCTCTACCTACCTACCTGTGTCGGTTT 40945 >seq1041777 Length=87641 Score = 77.0 bits (84), Expect = 4e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 141 GGCACCCCTTC-TCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 ||||||| || |||| |||||| |||| |||||||||| ||||||| | ||||| | Sbjct 69550 GGCACCCGTTAATCCCAAAGTTATGGGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 69609 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| | | |||||||| ||| |||| Sbjct 69610 TCGTGCCCCTAGGTATTCTCTACCTACCTAACTGTGTCGATTTCGGGTA 69658 >seq239023 Length=83551 Score = 75.2 bits (82), Expect = 2e-11 Identities = 170/251 (68%), Gaps = 30/251 (12%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||| | ||| || |||||| ||||||| | ||| ||| Sbjct 12353 CTTAACCTTCCGACACTGGGCAGGTGGCAGCCCCCATACATGGACTTAC-GACTTTGCAG 12411 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCT 118 ||||||||||||| ||||| | |||| || || || ||| |||| | || Sbjct 12412 AGACCTGTGTTTTTGGTAAAAAATCGC--CCGAGCATGGTCACTGTGACCGC------CT 12463 Query 119 CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | | | | ||| | ||||| |||||||||| ||| ||||||||| Sbjct 12464 AAGGAAGGCATTC-------------CTTCTTCT--CGAAGTTACGAGGCTATTTTGCCG 12508 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTC 237 | || | || | |||| | || | ||| |||||||||||| ||| |||||||| Sbjct 12509 AGTTTC-TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTT 12565 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 12566 GGTTTTGGGTA 12576 >seq1330559 Length=746 Score = 73.4 bits (80), Expect = 5e-11 Identities = 83/109 (76%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||| ||| ||| | || | ||||||| | |||| | Sbjct 122 GGCACCCCTTCTCCCAAAGTTACAAGGCTATTGTACCCAGTTCCTTAGAGAGAGTTGTCT 181 Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| ||| |||||||| ||||| |||| Sbjct 182 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 228 >seq835859 Length=292234 Score = 73.4 bits (80), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 20/198 (10%) Strand=Plus/Minus Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85 ||||| | ||||||||| ||||| ||| ||| | ||||| ||||| ||||||||| Sbjct 237094 GTCAGACTCTATACATCGTGTTACCA-CTTGGCAGAGTCCTGT--TTTTAATAAACAGTC 237038 Query 86 GCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTG---G 142 ||| ||| || | | ||| | || |||| | | | || || | | Sbjct 237037 GCTACCCCCTGGTATGTGCCGCTTCC-------CAAC-CAAAGAT----AGGAGGGAGAG 236990 Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCC 201 ||||||||||||||||||||| ||| ||||||||||| |||||| ||| |||| | | Sbjct 236989 CACCCCTTCTCCCGAAGTTAC-GGGTCATTTTGCCGAGTTCCTTCAACATTGGTTCTCTC 236931 Query 202 GAACGCCTTAGTATTCTC 219 | |||| |||||| ||| Sbjct 236930 AAGCGCCCTAGTATACTC 236913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682557358672