Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1634679 104 3e-20
seq1558990 102 1e-19
seq759485 100 4e-19
seq1318132 96.9 5e-18
seq20430 96.9 5e-18
seq1453685 91.5 2e-16
seq722538 89.7 7e-16
seq316335 89.7 7e-16
seq1121001 87.8 2e-15
seq658969 87.8 2e-15
seq1590017 84.2 3e-14
seq504398 82.4 1e-13
seq992759 80.6 4e-13
seq285754 80.6 4e-13
seq1041777 77.0 4e-12
seq239023 75.2 2e-11
seq1330559 73.4 5e-11
seq835859 73.4 5e-11
>seq1634679
Length=467642
Score = 104 bits (114), Expect = 3e-20
Identities = 84/102 (82%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||| ||||| |||||||||| ||||||| | |||| |
Sbjct 336289 GGCACCCCTTCTCCCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 336348
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|| | ||| ||||||||||||| | ||||||||||||||
Sbjct 336349 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTT 336390
>seq1558990
Length=145297
Score = 102 bits (112), Expect = 1e-19
Identities = 160/223 (72%), Gaps = 16/223 (7%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| |||||| ||| ||| | ||
Sbjct 103557 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCGGCTTGGCAGAGTCC 103498
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
| |||||||| |||| ||||||| | | || | | ||| | | ||| | ||| |
Sbjct 103497 TCTGTTTTTA-TAAATAGTCGCTACGCCCTGGTATGTGCCGCTTTC-CCAACCCAA-AGA 103441
Query 126 TCGTTCACCAGCAGTG---GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
| || || | ||| |||||||||||||||||| ||| |||||| |||| ||
Sbjct 103440 T--------AGGAGGGAGAGCA-CCCTTCTCCCGAAGTTAC-GGGTCATTTTTCCGAGTT 103391
Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTG 225
|||| | || |||| | | | | || |||||| |||||| ||
Sbjct 103390 CCTTCAACATGGTTCTCTCAAGCACCCTAGTATACTCTACTTG 103348
>seq759485
Length=62889
Score = 100 bits (110), Expect = 4e-19
Identities = 171/249 (69%), Gaps = 27/249 (11%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || ||||| | ||| | ||| |||
Sbjct 37683 CTTAACCTTCCGACACTGGGCAGGCGTCAGCCCCCTTACATGGTCTTGT-GACTTTGCAG 37625
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||| ||||| ||||| |||| ||| ||| || ||| |||| ||
Sbjct 37624 AGACCTGTATTTTTGGTAAATAGTCACTTGGGCCTAGTCACTGTGACCTCCTA------- 37572
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| || |||||||||||||||| |||||||||| ||||| || |
Sbjct 37571 --------------AGGAG--GCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAG 37528
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGG 239
||||||| | |||| | || | ||| |||||||||||| ||| |||||||| ||
Sbjct 37527 TTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGG 37470
Query 240 TTTACGGTA 248
||| ||||
Sbjct 37469 TTTTGGGTA 37461
>seq1318132
Length=193247
Score = 96.9 bits (106), Expect = 5e-18
Identities = 81/98 (83%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCCGAA 204
||||||||| |||||||||||| ||||||||||| |||||| ||| |||| | | |
Sbjct 106435 CCCTTCTCCTGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCAACATGTGTTCTCTCAAG 106376
Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|||| |||||| |||||| || |||||||||||||||
Sbjct 106375 CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 106338
>seq20430
Length=416392
Score = 96.9 bits (106), Expect = 5e-18
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| |||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 356516 GGCACCCGTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 356575
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| || ||| ||||||||||||| | || |||||| |||| ||||
Sbjct 356576 CACACCCCTAGGTATTCTCTACCTACCTACTTGTGTCAGTTTCGGGTA 356623
>seq1453685
Length=202813
Score = 91.5 bits (100), Expect = 2e-16
Identities = 84/104 (81%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||| |||||||||||| ||| | |||| ||||||| | |||| |
Sbjct 79338 GGCACCCCTTCTCCCAAAGTTACGGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 79397
Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACC-TGTGTCGGTTT 242
|| | ||||| ||||||||||||| | ||| |||||||||||
Sbjct 79398 CGCGCCCCTTAGGTATTCTCTACCTACCTACCTTGTGTCGGTTT 79441
>seq722538
Length=4971
Score = 89.7 bits (98), Expect = 7e-16
Identities = 169/249 (68%), Gaps = 26/249 (10%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || ||||| | ||| | ||| |||
Sbjct 4580 CTTAACCTTCCGGCAC-GGGCAGGCGTCAGCCCCCTTACATGGTCTTGT-GACTTTGCAG 4637
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||| ||||| ||||| |||| ||| ||| || ||| |||| ||
Sbjct 4638 AGACCTGTATTTTTGGTAAATAGTCACTTGGGCCTAGTCACTGTGACCTCCTA------- 4690
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| || |||||||||||||||| |||||||||| ||||| || |
Sbjct 4691 --------------AGGAG--GCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAG 4734
Query 181 TTCCTTA-ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
||||||| | |||| | || | || ||||||||||||| | ||||||||| |
Sbjct 4735 TTCCTTAGAGAGAAGTTGTCTCGCGCCCCAAGGTATTCTCTACCTACCTACCTGTGTCAG 4794
Query 240 TTTACGGTA 248
||| ||||
Sbjct 4795 TTTCAGGTA 4803
>seq316335
Length=88360
Score = 89.7 bits (98), Expect = 7e-16
Identities = 86/109 (79%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197
|| ||||||||||||| |||||||||||| | ||||||| || ||||||| | ||||
Sbjct 77124 AGAGGCACCCCTTCTCTCGAAGTTACGGG-CTATTTTGCTGAGTTCCTTAGAGAGAGTTG 77066
Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246
| || | ||| ||||||||||||| | ||||||||||| || |||
Sbjct 77065 TCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGGTTTCGG 77017
>seq1121001
Length=2964
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/109 (79%), Gaps = 3/109 (3%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||| |||||||||| ||||| || | ||||||| | |||| |
Sbjct 299 GGCACCCCTTCTCCCGACGTTACGGGGCTATTTTTCCAAGTTCCTTAGAGAGAGTTGTCT 240
Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248
|| | ||| |||||||||||| ||| |||||||| ||||| ||||
Sbjct 239 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 193
>seq658969
Length=977
Score = 87.8 bits (96), Expect = 2e-15
Identities = 179/254 (70%), Gaps = 33/254 (13%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACC-GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCA 59
|||| ||||||| ||| ||||| |||| ||||| |||||| ||||||| | ||| |
Sbjct 285 CTTAACCTTCCAGCACTTGGGCAAGCGTTAGTCCCCATACAT-GACTTAC-GACTTTGTG 228
Query 60 CGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119
||||| ||||||| |||||||||||| ||| | | || ||
Sbjct 227 TAGACCTATGTTTTT-GTAAACAGTCGCC---------------CGAAGCCTA--AG-TC 187
Query 120 AACACGTCGTTCACC--AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177
||| | || | || || || ||||||||||||||||||||||||||| |||||| |
Sbjct 186 AACT-GCCGACCTCCTAAGAAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG-C 131
Query 178 GAATTCC--TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGT 234
|| |||| ||| | |||| | || | ||| |||||||||||| ||| ||||||
Sbjct 130 GAGTTCCTTTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGT 73
Query 235 GTCGGTTTACGGTA 248
|| ||||| ||||
Sbjct 72 GTTGGTTTTGGGTA 59
>seq1590017
Length=787
Score = 84.2 bits (92), Expect = 3e-14
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||| ||||||| |||| ||| | |||| ||||||| | |||| |
Sbjct 68 GGCACCCCTTCTCCCAAAGTTACAGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 127
Query 201 CGAACGCCTTA-GTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248
|| ||| | ||||||||||||| || |||||||||||||| ||||
Sbjct 128 CGCGGCCCTAAGGTATTCTCTACCTACCCTACCTGTGTCGGTTTCGGGTA 177
>seq504398
Length=1374
Score = 82.4 bits (90), Expect = 1e-13
Identities = 85/109 (78%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||| ||||||| |||| ||| | |||| ||||||| | |||| |
Sbjct 1053 GGCACCCCTTCTCCCAAAGTTACAGGGCTATTGTACCGAGTTCCTTAGAGAGAGTTGTCT 1112
Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248
|| | ||| |||||||||||| ||| |||||||| ||||| ||||
Sbjct 1113 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 1159
>seq992759
Length=611
Score = 80.6 bits (88), Expect = 4e-13
Identities = 86/109 (79%), Gaps = 5/109 (5%)
Strand=Plus/Minus
Query 144 ACCCCTTCTCCCGAA-GTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC-C 201
||||||||||||||| |||||||||| ||||||| || ||||||| | |||| | |
Sbjct 330 ACCCCTTCTCCCGAAAGTTACGGGGCTATTTTGC-GAGTTCCTTAGAGAGAGTTTGTCTC 272
Query 202 GAACGCCTTA--GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||||| ||||||||||||| | |||||||||| ||| ||||
Sbjct 271 GCGCCCCTTAAGGTATTCTCTACCTACCTACCTGTGTCGATTTCGGGTA 223
>seq285754
Length=104627
Score = 80.6 bits (88), Expect = 4e-13
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 154 CCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGT 213
||||||||||||||| |||||||||| ||||||| | |||| | | | ||| ||
Sbjct 41033 CCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTTGCGCCCCTAGGT 40974
Query 214 ATTCTCTACCTGACCACCTGTGTCGGTTT 242
||||||||||| | ||||||||||||||
Sbjct 40973 ATTCTCTACCTACCTACCTGTGTCGGTTT 40945
>seq1041777
Length=87641
Score = 77.0 bits (84), Expect = 4e-12
Identities = 83/109 (76%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 141 GGCACCCCTTC-TCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199
||||||| || |||| |||||| |||| |||||||||| ||||||| | ||||| |
Sbjct 69550 GGCACCCGTTAATCCCAAAGTTATGGGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 69609
Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| | | |||||||| ||| ||||
Sbjct 69610 TCGTGCCCCTAGGTATTCTCTACCTACCTAACTGTGTCGATTTCGGGTA 69658
>seq239023
Length=83551
Score = 75.2 bits (82), Expect = 2e-11
Identities = 170/251 (68%), Gaps = 30/251 (12%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||| | ||| || |||||| ||||||| | ||| |||
Sbjct 12353 CTTAACCTTCCGACACTGGGCAGGTGGCAGCCCCCATACATGGACTTAC-GACTTTGCAG 12411
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCT 118
||||||||||||| ||||| | |||| || || || ||| |||| | ||
Sbjct 12412 AGACCTGTGTTTTTGGTAAAAAATCGC--CCGAGCATGGTCACTGTGACCGC------CT 12463
Query 119 CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178
| | | | ||| | ||||| |||||||||| ||| |||||||||
Sbjct 12464 AAGGAAGGCATTC-------------CTTCTTCT--CGAAGTTACGAGGCTATTTTGCCG 12508
Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTC 237
| || | || | |||| | || | ||| |||||||||||| ||| ||||||||
Sbjct 12509 AGTTTC-TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTT 12565
Query 238 GGTTTACGGTA 248
||||| ||||
Sbjct 12566 GGTTTTGGGTA 12576
>seq1330559
Length=746
Score = 73.4 bits (80), Expect = 5e-11
Identities = 83/109 (76%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||| ||||||| ||| ||| | || | ||||||| | |||| |
Sbjct 122 GGCACCCCTTCTCCCAAAGTTACAAGGCTATTGTACCCAGTTCCTTAGAGAGAGTTGTCT 181
Query 201 CGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGGTTTACGGTA 248
|| | ||| |||||||||||| ||| |||||||| ||||| ||||
Sbjct 182 CGTGCCCCTAGGTATTCTCTACC--ACCTACCTGTGTTGGTTTTGGGTA 228
>seq835859
Length=292234
Score = 73.4 bits (80), Expect = 5e-11
Identities = 139/198 (70%), Gaps = 20/198 (10%)
Strand=Plus/Minus
Query 26 GTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTC 85
||||| | ||||||||| ||||| ||| ||| | ||||| ||||| |||||||||
Sbjct 237094 GTCAGACTCTATACATCGTGTTACCA-CTTGGCAGAGTCCTGT--TTTTAATAAACAGTC 237038
Query 86 GCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTG---G 142
||| ||| || | | ||| | || |||| | | | || || | |
Sbjct 237037 GCTACCCCCTGGTATGTGCCGCTTCC-------CAAC-CAAAGAT----AGGAGGGAGAG 236990
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCC 201
||||||||||||||||||||| ||| ||||||||||| |||||| ||| |||| | |
Sbjct 236989 CACCCCTTCTCCCGAAGTTAC-GGGTCATTTTGCCGAGTTCCTTCAACATTGGTTCTCTC 236931
Query 202 GAACGCCTTAGTATTCTC 219
| |||| |||||| |||
Sbjct 236930 AAGCGCCCTAGTATACTC 236913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682557358672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |