Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq835859 82.4 8e-14
seq1634679 73.4 4e-11
>seq835859
Length=292234
Score = 82.4 bits (90), Expect = 8e-14
Identities = 67/79 (85%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 46 TTGAATATACTAAGGCGCTTGAGTGAATCACGGTT-AAGGAACTAGGCAAACTGACCCTG 104
|||| ||||||| |||||||||| ||| || ||| |||||||| |||||| |||||| |
Sbjct 236911 TTGAGTATACTAGGGCGCTTGAGAGAACCAATGTTGAAGGAACTCGGCAAAATGACCC-G 236969
Query 105 TAACTTCGGGATAAAGGGT 123
||||||||||| || ||||
Sbjct 236970 TAACTTCGGGAGAAGGGGT 236988
>seq1634679
Length=467642
Score = 73.4 bits (80), Expect = 4e-11
Identities = 117/166 (70%), Gaps = 9/166 (5%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 336390 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 336332
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | ||| ||||||||||| || |||| ||| | | |||||
Sbjct 336331 GAACTCGGCAAAATAGCCCCATAACTTCGGGAGAAGGGGTGCCTCC-------TAGGAGG 336279
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
||||| | | | || ||| |||||||| |||||||||||| ||
Sbjct 336278 TCGCAGTGGACTAGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 336233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 522140652256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |