Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq835859 82.4 8e-14 seq1634679 73.4 4e-11 >seq835859 Length=292234 Score = 82.4 bits (90), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 46 TTGAATATACTAAGGCGCTTGAGTGAATCACGGTT-AAGGAACTAGGCAAACTGACCCTG 104 |||| ||||||| |||||||||| ||| || ||| |||||||| |||||| |||||| | Sbjct 236911 TTGAGTATACTAGGGCGCTTGAGAGAACCAATGTTGAAGGAACTCGGCAAAATGACCC-G 236969 Query 105 TAACTTCGGGATAAAGGGT 123 ||||||||||| || |||| Sbjct 236970 TAACTTCGGGAGAAGGGGT 236988 >seq1634679 Length=467642 Score = 73.4 bits (80), Expect = 4e-11 Identities = 117/166 (70%), Gaps = 9/166 (5%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 336390 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 336332 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| ||||||||||| || |||| ||| | | ||||| Sbjct 336331 GAACTCGGCAAAATAGCCCCATAACTTCGGGAGAAGGGGTGCCTCC-------TAGGAGG 336279 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| | | | || ||| |||||||| |||||||||||| || Sbjct 336278 TCGCAGTGGACTAGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 336233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522140652256