Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1603215 100 2e-19 seq1505645 100 2e-19 seq632432 100 2e-19 seq534828 100 2e-19 seq562865 77.0 2e-12 seq1504762 71.6 8e-11 seq1296998 71.6 8e-11 seq1189436 71.6 8e-11 seq708465 71.6 8e-11 seq624082 71.6 8e-11 seq451272 71.6 8e-11 seq138013 71.6 8e-11 seq53998 71.6 8e-11 >seq1603215 Length=1787 Score = 100 bits (110), Expect = 2e-19 Identities = 77/86 (90%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||| ||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 110 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 166 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 167 GGCAGGGACGTAAT-CAACGCAAGCT 191 >seq1505645 Length=3636 Score = 100 bits (110), Expect = 2e-19 Identities = 77/86 (90%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||| ||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 1953 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 2009 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 2010 GGCAGGGACGTAAT-CAACGCAAGCT 2034 >seq632432 Length=5869 Score = 100 bits (110), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||||||||| || |||||| || ||||||||||| |||||||||||||||||||| Sbjct 1430 CTCACTAAGCCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1373 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 1372 TAAT-CAACGCAAGCT 1358 >seq534828 Length=3660 Score = 100 bits (110), Expect = 2e-19 Identities = 77/86 (90%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||| ||| |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 1978 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 2034 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||||||||| Sbjct 2035 GGCAGGGACGTAAT-CAACGCAAGCT 2059 >seq562865 Length=1303 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||| || | Sbjct 1302 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAATGCGA 1245 Query 122 G 122 | Sbjct 1244 G 1244 >seq1504762 Length=795 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| ||| Sbjct 662 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 719 Query 122 G 122 | Sbjct 720 G 720 >seq1296998 Length=10335 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| ||| Sbjct 131 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 188 Query 122 G 122 | Sbjct 189 G 189 >seq1189436 Length=1191 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 110 |||| ||||||| | |||||||||||||||||||||||||||||||||| Sbjct 94 TTCAATCGGTAGGA-GCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 47 >seq708465 Length=227573 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| ||| Sbjct 71149 TTCAATCGGTAGGA-GCGACGGGCGGCGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 71092 Query 122 G 122 | Sbjct 71091 G 71091 >seq624082 Length=1392 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| ||| Sbjct 524 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 467 Query 122 G 122 | Sbjct 466 G 466 >seq451272 Length=3063 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 110 |||| ||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 909 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTA 956 >seq138013 Length=44050 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 37539 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 37596 Query 122 G 122 | Sbjct 37597 G 37597 >seq53998 Length=1401 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1005 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 948 Query 122 G 122 | Sbjct 947 G 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295835491520