Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq1603215 100 2e-19
seq1505645 100 2e-19
seq632432 100 2e-19
seq534828 100 2e-19
seq562865 77.0 2e-12
seq1504762 71.6 8e-11
seq1296998 71.6 8e-11
seq1189436 71.6 8e-11
seq708465 71.6 8e-11
seq624082 71.6 8e-11
seq451272 71.6 8e-11
seq138013 71.6 8e-11
seq53998 71.6 8e-11
>seq1603215
Length=1787
Score = 100 bits (110), Expect = 2e-19
Identities = 77/86 (90%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||| ||| |||||| ||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 110 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 166
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 167 GGCAGGGACGTAAT-CAACGCAAGCT 191
>seq1505645
Length=3636
Score = 100 bits (110), Expect = 2e-19
Identities = 77/86 (90%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||| ||| |||||| ||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 1953 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 2009
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 2010 GGCAGGGACGTAAT-CAACGCAAGCT 2034
>seq632432
Length=5869
Score = 100 bits (110), Expect = 2e-19
Identities = 70/76 (92%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||||||||| || |||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1430 CTCACTAAGCCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1373
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 1372 TAAT-CAACGCAAGCT 1358
>seq534828
Length=3660
Score = 100 bits (110), Expect = 2e-19
Identities = 77/86 (90%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||| ||| |||||| ||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 1978 TCCGGAAGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 2034
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 2035 GGCAGGGACGTAAT-CAACGCAAGCT 2059
>seq562865
Length=1303
Score = 77.0 bits (84), Expect = 2e-12
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||| || |
Sbjct 1302 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAATGCGA 1245
Query 122 G 122
|
Sbjct 1244 G 1244
>seq1504762
Length=795
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 662 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 719
Query 122 G 122
|
Sbjct 720 G 720
>seq1296998
Length=10335
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 131 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 188
Query 122 G 122
|
Sbjct 189 G 189
>seq1189436
Length=1191
Score = 71.6 bits (78), Expect = 8e-11
Identities = 46/49 (94%), Gaps = 1/49 (2%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 110
|||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 94 TTCAATCGGTAGGA-GCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 47
>seq708465
Length=227573
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 71149 TTCAATCGGTAGGA-GCGACGGGCGGCGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 71092
Query 122 G 122
|
Sbjct 71091 G 71091
>seq624082
Length=1392
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 524 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACACAA 467
Query 122 G 122
|
Sbjct 466 G 466
>seq451272
Length=3063
Score = 71.6 bits (78), Expect = 8e-11
Identities = 46/49 (94%), Gaps = 1/49 (2%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 110
|||| ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 909 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTA 956
>seq138013
Length=44050
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 37539 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 37596
Query 122 G 122
|
Sbjct 37597 G 37597
>seq53998
Length=1401
Score = 71.6 bits (78), Expect = 8e-11
Identities = 54/61 (89%), Gaps = 2/61 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1005 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 948
Query 122 G 122
|
Sbjct 947 G 947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 295835491520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |