Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq153501 140 6e-31 >seq153501 Length=630 Score = 140 bits (154), Expect = 6e-31 Identities = 212/298 (71%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 5 TTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTG 64 || |||||||| || | ||||| || | ||| ||||| ||| | ||||||||| || Sbjct 483 TTCAGCTTGCTGGCGATCGGCAGGAAGAACAGATTGGCCGAGGCGATGCCGTAGATCGTC 424 Query 65 GCGACAAACGCCACGGCAATGCCGCTGCCCAG-TTGCGAAGGGTCGGCGAGGTTGCCCAT 123 ||| || ||| |||| |||||| ||| || |||| |||||||||||||| ||| Sbjct 423 GCGGTGAAGGCCGCGGCGATGCCGTGGCCGAGCTTGCTG-GGGTCGGCGAGGTTCTTCAT 365 Query 124 CACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCAT 183 ||| ||||||||| | ||| || ||||||||||| | || ||||| ||| |||||| Sbjct 364 CACCGCGATCAGGCCGAACACGGCGCCGATGATGCCCAGCGTGGGCGCATAGATGCCCAT 305 Query 184 GCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCACTT 243 ||| || || ||||||||| || || || ||||| || || || || | | Sbjct 304 CGCTTCGAACACCTTGGCGGCGGCGAGGTCCTGGTGTTCCT-GGCCGTTGAGGTCGATCT 246 Query 244 CCCGAAGTCTGCGAATCGCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTTT 301 || | ||| ||||| || || ||| | ||||| ||||||| |||||||| || Sbjct 245 CCATCATGTGGCGGATCGCCTCGGGTTCGACACCGTCGACCAGCATCTGCAGGCCCTT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971392531968