Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1468641 82.4 5e-14 seq1188842 82.4 5e-14 seq36719 73.4 3e-11 >seq1468641 Length=444 Score = 82.4 bits (90), Expect = 5e-14 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6 TTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTC 65 |||||||||||||||| | |||||||| ||| || |||||||||| | || ||||| Sbjct 145 TTTATCCGTTGAGCGACGACCCTTCCACTCAGCACCGTCGGATCACTAAGTCCGACTTTC 86 Query 66 GCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 | |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 85 GTCCCTGCTCGATGGGTGGGTCTTGCAGTCAAGCTCTCTTCTGCCTTTGCACT 33 >seq1188842 Length=604 Score = 82.4 bits (90), Expect = 5e-14 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6 TTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTC 65 |||||||||||||||| | |||||||| ||| || |||||||||| | || ||||| Sbjct 142 TTTATCCGTTGAGCGACGACCCTTCCACTCAGCACCGTCGGATCACTAAGTCCGACTTTC 83 Query 66 GCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 | |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 82 GTCCCTGCTCGATGGGTGGGTCTTGCAGTCAAGCTCTCTTCTGCCTTTGCACT 30 >seq36719 Length=373023 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||| ||||||||| |||||||| || ||| |||||||||| | || Sbjct 207997 TAACTTTTATCGGTTGAGCGACAACCCTTCCACTCGGCACCATCGGATCACTAAGGCCAA 208056 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| || ||| | || | ||| || |||||| | ||| |||||||||||| Sbjct 208057 CTTTCGTCCCTACTCGATGGGTGGGTCTTACAGTCAAGCTCTCTTCTGCCATTGCACT 208114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346190468800