Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005057.1 Length=1367 Score E Sequences producing significant alignments: (Bits) Value seq798406 107 2e-20 >seq798406 Length=249124 Score = 107 bits (118), Expect = 2e-20 Identities = 178/249 (71%), Gaps = 16/249 (6%) Strand=Plus/Plus Query 680 CTGGTTTTATACACGTGGAGGATCTGCTGATAATGTTAGTTATCAGTATATAGGATGCTT 739 ||||||||| || ||| || |||| || ||| | | ||||||||| | || | Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTC 130110 Query 740 AGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTTCAATACAGTT 798 ||||| ||| ||||||||||||| ||||||||||| |||| |||||||| ||| | Sbjct 130111 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 130170 Query 799 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCC-TTTAATG 854 |||| |||| | | || || || ||| || || | |||| ||||| || ||| || Sbjct 130171 TAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTG 130227 Query 855 GCCCCTTTAG---TTAATTGTATTCATGTTTTAGTTATGTCTAATTTTCTCCCTGATTTT 911 | ||| | | ||| ||||||||| | |||||||||||||| | ||||||| | Sbjct 130228 G----TTTTGCTATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTAT 130283 Query 912 GAGAAGATT 920 ||||| ||| Sbjct 130284 GAGAAAATT 130292 Score = 100 bits (110), Expect = 2e-18 Identities = 178/251 (71%), Gaps = 19/251 (8%) Strand=Plus/Plus Query 680 CTGGTTTTATACACGTGGAGGATCTGCTGATAATGTTAGTTATCAGTATATAGGATGCTT 739 ||||||||| || ||| || |||| || ||| | | ||||||||| | | || | Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 740 AGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTTCAATACAGTT 798 ||||| ||| ||||||||||||| ||||||||||| |||| |||||||| ||| | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 799 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTATGAGCC-TTTAATG 854 |||| |||| | | || || || ||| || ||| |||| ||||| || ||| || Sbjct 127859 TAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTG 127915 Query 855 GCCCCTTTAG---TTAATTGTATTCATGTTTTAGTTATGTCTAATTTTCTCCCTGATTTT 911 | ||| | | ||| ||||||||| |||| ||||||||| | ||||||| | Sbjct 127916 G----TTTTGCTATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTAT 127968 Query 912 GAGAAGATTAG 922 | ||| ||||| Sbjct 127969 GCGAAAATTAG 127979 Score = 89.7 bits (98), Expect = 4e-15 Identities = 175/251 (70%), Gaps = 16/251 (6%) Strand=Plus/Plus Query 680 CTGGTTTTATACACGTGGAGGATCTGCTGATAATGTTAGTTATCAGTATATAGGATGCTT 739 ||||||||| || ||| || |||| || ||| | | ||||||||| | | || | Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 128956 Query 740 AGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTTCAATACAGTT 798 ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || ||| | Sbjct 128957 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTG 129016 Query 799 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCC-TTTAATG 854 |||| ||| | | || || || ||| || || | |||| || || || ||| || Sbjct 129017 TAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTG 129073 Query 855 GCCCCTTTAG---TTAATTGTATTCATGTTTTAGTTATGTCTAATTTTCTCCCTGATTTT 911 | ||| | | ||| ||||||||| | |||||| ||||||| | |||||| | Sbjct 129074 G----TTTTGCTATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTAT 129129 Query 912 GAGAAGATTAG 922 | ||| ||||| Sbjct 129130 GCGAAAATTAG 129140 Score = 86.0 bits (94), Expect = 5e-14 Identities = 172/248 (69%), Gaps = 14/248 (6%) Strand=Plus/Plus Query 680 CTGGTTTTATACACGTGGAGGATCTGCTGATAATGTTAGTTATCAGTATATAGGATGCTT 739 ||||||||| || || || |||| || ||| | | ||||||||| | | || | Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 131263 Query 740 AGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTTCAATACAGTT 798 ||||| ||| ||||||||||||| ||||||||||| |||| |||||||| ||| | Sbjct 131264 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 131323 Query 799 TAATAGAGATGTTTAAGGATAGGTTAATAGTTAGTAATAAGTATGAGCC-TTTAATGGCC 857 |||| |||| | | || | | | ||| | |||| ||||| || ||| ||| Sbjct 131324 TAATCGAGAAGATGAA--AAAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGG-- 131377 Query 858 CCTTTAG---TTAATTGTATTCATGTTTTAGTTATGTCTAATTTTCTCCCTGATTTTGAG 914 ||| | | ||| ||||||||| | |||||| | ||||| | ||||||| || | Sbjct 131378 --TTTTGCTATGAATAAAATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGCG 131435 Query 915 AAGATTAG 922 || ||||| Sbjct 131436 AAAATTAG 131443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4185812250592