Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005058.1 Length=1363 Score E Sequences producing significant alignments: (Bits) Value seq798406 95.1 1e-16 >seq798406 Length=249124 Score = 95.1 bits (104), Expect = 1e-16 Identities = 173/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 696 TGGTTTTATACACGTGGCGGTTCTGGGGATAATGTTAGTTATCAGTATATTGGTTGTTTA 755 |||||||| || ||| ||||||| | ||| | | ||||||||| | |||| Sbjct 130053 TGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTCT 130111 Query 756 GGGCAT-AATATTGTATTTGATATTCCTCGTGATAGGAAGGACTACCTGCAATATAGTTT 814 || | ||| |||||||||||||||||||||||| |||| || || || || | | Sbjct 130112 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGT 130171 Query 815 AATTGAGATGTTTAAGGATAGATTAATTGTT-AGTA--ACAAGTACGAGCC-GTTAATGG 870 ||| |||| | | || || ||| ||||| ||| | || || || || |||| ||| Sbjct 130172 AATCGAGAAGATGAAAGACAGA---ATTGTGCAGTCTGATAAATATGAACCAGTTACTGG 130228 Query 871 CTCCACTTGTTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCTGATTTTGAGA 930 | || | ||| ||||||||||| |||||||||||||| | ||||||| ||||| Sbjct 130229 TTTTGCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGA 130287 Query 931 AGATT 935 | ||| Sbjct 130288 AAATT 130292 Score = 89.7 bits (98), Expect = 4e-15 Identities = 173/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 696 TGGTTTTATACACGTGGCGGTTCTGGGGATAATGTTAGTTATCAGTATATTGGTTGTTTA 755 |||||||| || ||| ||||||| | ||| | | ||||||||| | | |||| Sbjct 128899 TGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTCT 128957 Query 756 GGGCAT-AATATTGTATTTGATATTCCTCGTGATAGGAAGGACTACCTGCAATATAGTTT 814 || | ||| |||||||||||||||||||||||| |||| || ||||| || | | Sbjct 128958 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGT 129017 Query 815 AATTGAGATGTTTAAGGATAGATTAATTGT-TAG--TAACAAGTACGAGCC-GTTAATGG 870 ||| ||| | | || || || |||||| || | | || || || || |||| ||| Sbjct 129018 AATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTGG 129074 Query 871 CTCCACTTGTTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCTGATTTTGAGA 930 | | | | ||| ||||||||||| |||||| ||||||| | |||||| || || Sbjct 129075 TTTTGC-TATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGA 129133 Query 931 AGATTAG 937 | ||||| Sbjct 129134 AAATTAG 129140 Score = 84.2 bits (92), Expect = 2e-13 Identities = 172/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Plus Query 696 TGGTTTTATACACGTGGCGGTTCTGGGGATAATGTTAGTTATCAGTATATTGGTTGTTTA 755 |||||||| || ||| ||||||| | ||| | | ||||||||| | | |||| Sbjct 127741 TGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTCT 127799 Query 756 GGGCAT-AATATTGTATTTGATATTCCTCGTGATAGGAAGGACTACCTGCAATATAGTTT 814 || | ||| |||||||||||||||||||||||| |||| || || || || | | Sbjct 127800 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGT 127859 Query 815 AATTGAGATGTTTAAGGATAGATTAATTGT-TAGT--AACAAGTACGAGCC-GTTAATGG 870 ||| |||| | | || || || |||||| ||| | || || || || |||| ||| Sbjct 127860 AATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTGG 127916 Query 871 CTCCACTTGTTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCTGATTTTGAGA 930 | | | | ||| ||||||||| |||| ||||||||| | ||||||| || || Sbjct 127917 TTTTGC-TATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATGCGA 127972 Query 931 AGATTAG 937 | ||||| Sbjct 127973 AAATTAG 127979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4173251673696