Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005954.1 Length=1377 Score E Sequences producing significant alignments: (Bits) Value seq798406 100 2e-18 >seq798406 Length=249124 Score = 100 bits (110), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 10/193 (5%) Strand=Plus/Plus Query 755 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGAGTATCTTCAGTATAGTTTAATA 814 || ||| ||||||||||||||||||||||||| |||| ||||||||||| | |||| Sbjct 130116 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 130175 Query 815 GAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTACGAGCCTCTTA-TGGCCCCT 871 |||| | | || || ||| | | ||| | |||| || || || ||| ||| | Sbjct 130176 GAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGG---TT 130230 Query 872 TTGC--TTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAGA 929 |||| | ||| ||||||||||| |||||||||||||| | || || | |||||| | Sbjct 130231 TTGCTATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAA 130290 Query 930 TTAGTCAGGATAG 942 || | || |||| Sbjct 130291 TTCGCCATCATAG 130303 Score = 84.2 bits (92), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 13/187 (7%) Strand=Plus/Plus Query 755 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGAGTATCTTCAGTATAGTTTAATA 814 || ||| ||||||||||||||||||||||||| |||| ||||||||||| | |||| Sbjct 127804 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 127863 Query 815 GAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTACGAGCCTCTTA-TGGCCCCT 871 |||| | | || || ||| | | ||| | |||| || || || ||| ||| | Sbjct 127864 GAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGG---TT 127918 Query 872 TTGC--TTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAGA 929 |||| | ||| ||||||||| |||| ||||||||| | || || | || ||| | Sbjct 127919 TTGCTATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATGCGAAAA 127975 Query 930 TTAGTCA 936 |||| || Sbjct 127976 TTAGCCA 127982 Score = 80.6 bits (88), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 755 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGAGTATCTTCAGTATAGTTTAATA 814 || ||| ||||||||||||||||||||||||| |||| ||||| ||||| | |||| Sbjct 128962 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATC 129021 Query 815 GAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTACGAGCCTCTTA-TGGCCCCT 871 ||| | | || || ||| | | ||| | |||| || || || ||| ||| | Sbjct 129022 AAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAGAACCAGTTACTGG---TT 129076 Query 872 TTGC--TTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAGA 929 |||| | ||| ||||||||||| |||||| ||||||| | | || | || ||| | Sbjct 129077 TTGCTATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAA 129136 Query 930 TTAGTCA 936 |||| || Sbjct 129137 TTAGCCA 129143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4217213692832