Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_007640.1 Length=1384 Score E Sequences producing significant alignments: (Bits) Value seq798406 102 7e-19 >seq798406 Length=249124 Score = 102 bits (112), Expect = 7e-19 Identities = 183/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGT-TGTT 747 |||||| || || ||| ||||||| || ||| | | |||||||| | || |||| Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTA--TGCGTCTGTT 130109 Query 748 TAGGAAAT-AATATTGTATTCGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGT 806 ||||| ||| ||||||| ||||| ||||||||||| |||| ||||| || ||| | Sbjct 130110 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 130169 Query 807 TTAATAGAAATGTTTAAAGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTGA-T 862 |||| || | | | ||||| || ||| || || | |||| ||||| || | | | Sbjct 130170 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACT 130226 Query 863 GGCTCCTCTAATTAATTGTATCCATGTAGTTGTAATGTCTAATTTTATGCCTGACTTTGA 922 || | || || ||| || ||||| ||||| ||||||||||| ||||||| | ||| Sbjct 130227 GGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGA 130285 Query 923 GAAGATTAGTCAGGATAG 940 ||| ||| | || |||| Sbjct 130286 GAAAATTCGCCATCATAG 130303 Score = 91.5 bits (100), Expect = 1e-15 Identities = 235/346 (68%), Gaps = 19/346 (5%) Strand=Plus/Plus Query 597 GACCCAGATGACCGCACTATCTTCTGGGTGTATGGTCCCACTGGTGGAGAAGGGAAATCG 656 || ||||||||| | | || ||||||||| || || || || ||||| || || Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 657 ACCTTCGCGCGAGA--CTTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGTTCT 713 | ||| |||| |||||| | |||| |||||| || || ||| |||||| Sbjct 128869 GAGTATGCG-GAGAAGCTTGTAGCTGAAGG-----CTGGTTTTAGACTAATGGTGGTTCT 128922 Query 714 GCTGATAATGTTAGTTATCAGTACATAGGTTGTTTAGGAAAT-AATATTGTATTCGATAT 772 | || ||| | | |||||||| | | |||| ||||| ||| ||||||| ||||| Sbjct 128923 GTTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATAT 128981 Query 773 CCCTCGTGATAAGAAGGATTATCTGCAATACAGTTTAATAGAAATGTTTAAAGATAGGTT 832 ||||||||||| |||| |||||||| ||| | |||| | | | | ||||| || Sbjct 128982 TCCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAG--- 129038 Query 833 AATAGT-TAG--TAATAAGTATGAGCCTCTGA-TGGCTCCTCTAATTAATTGTATCCATG 888 ||| || || | |||| || || || | | ||| | || || ||| || |||| Sbjct 129039 AATTGTGCAGTCTGATAAATAAGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCATG 129097 Query 889 TAGTTGTAATGTCTAATTTTATGCCTGACTTTGAGAAGATTAGTCA 934 | ||||| ||| ||||||| || |||| | || ||| ||||| || Sbjct 129098 TTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAGCCA 129143 Score = 86.0 bits (94), Expect = 5e-14 Identities = 175/251 (70%), Gaps = 13/251 (5%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTTGTTT 748 |||||| || || ||| ||||||| || ||| | | |||||||| | | |||| Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 749 AGGAAAT-AATATTGTATTCGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 807 ||||| ||| ||||||| ||||| ||||||||||| |||| ||||| || ||| | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 808 TAATAGAAATGTTTAAAGATAGGTTAATAGT-TAGT--AATAAGTATGAGCCTCTGA-TG 863 |||| || | | | ||||| || ||| || ||| |||| ||||| || | | || Sbjct 127859 TAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTG 127915 Query 864 GCTCCTCTAATTAATTGTATCCATGTAGTTGTAATGTCTAATTTTATGCCTGACTTTGAG 923 | | || || ||| || ||| ||||| | ||||||||| ||||||| | || | Sbjct 127916 GTTTTGCT-ATGAATAAAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGCG 127971 Query 924 AAGATTAGTCA 934 || ||||| || Sbjct 127972 AAAATTAGCCA 127982 Score = 77.0 bits (84), Expect = 3e-11 Identities = 170/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTTGTTT 748 |||||| || || || ||||||| || ||| | | |||||||| | | |||| Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 131263 Query 749 AGGAAAT-AATATTGTATTCGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 807 ||||| ||| ||||||| ||||| ||||||||||| |||| ||||| || ||| | Sbjct 131264 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 131323 Query 808 TAATAGAAATGTTTAAAGATAGGTTAATAGTTAGTAATAAGTATGAGCCTCTGA-TGGCT 866 |||| || | | | ||| | || ||| | |||| ||||| || | | ||| | Sbjct 131324 TAATCGAGAAGATGAAAAAATTGT--GCAGT--CTGATAAATATGAACCAGTTACTGGTT 131379 Query 867 CCTCTAATTAATTGTATCCATGTAGTTGTAATGTCTAATTTTATGCCTGACTTTGAGAAG 926 || || ||| || ||||| ||||| ||| | ||||| ||||||| | || ||| Sbjct 131380 TTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGCGAAA 131438 Query 927 ATTAGTCA 934 ||||| || Sbjct 131439 ATTAGCCA 131446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4239194702400