Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_008561.1 Length=1373 Score E Sequences producing significant alignments: (Bits) Value seq798406 118 9e-24 >seq798406 Length=249124 Score = 118 bits (130), Expect = 9e-24 Identities = 187/261 (72%), Gaps = 18/261 (7%) Strand=Plus/Plus Query 687 CTGGTTTTATACACGTGGTGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 746 ||||||||| || ||||||||||| || ||| | | |||||||| | ||| || Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTA--TGCGTCTGTT 130109 Query 747 AGGGAATA--ATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGT 804 |||| | || ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 130110 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 130169 Query 805 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTTA-T 860 |||| |||| | | || || || ||| || || | |||| ||||| || ||| | Sbjct 130170 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACT 130226 Query 861 GGCT---CCATTAATTAATTGTATTCATGTAGTTGTAATGTCTAATTTTATGCCTGACTT 917 || | | || ||| || |||||||| ||||| ||||||||||| ||||||| | Sbjct 130227 GGTTTTGCTATGAATAAA----ATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTA 130282 Query 918 TGAGAAGATTAGTCAGGATAG 938 |||||| ||| | || |||| Sbjct 130283 TGAGAAAATTCGCCATCATAG 130303 Score = 100 bits (110), Expect = 2e-18 Identities = 180/255 (71%), Gaps = 21/255 (8%) Strand=Plus/Plus Query 687 CTGGTTTTATACACGTGGTGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 746 ||||||||| || ||||||||||| || ||| | | |||||||| | ||| || Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 127797 Query 747 AGGGAATA--ATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGT 804 |||| | || ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 127798 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 127857 Query 805 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTATGAGCCTCTTA-T 860 |||| |||| | | || || || ||| || ||| |||| ||||| || ||| | Sbjct 127858 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACT 127914 Query 861 GGCT---CCATTAATTAATTGTATTCATGTAGTTGTAATGTCTAATTTTATGCCTGACTT 917 || | | || ||| || |||||| ||||| | ||||||||| ||||||| | Sbjct 127915 GGTTTTGCTATGAATAAA----ATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTA 127967 Query 918 TGAGAAGATTAGTCA 932 || ||| ||||| || Sbjct 127968 TGCGAAAATTAGCCA 127982 Score = 98.7 bits (108), Expect = 8e-18 Identities = 179/255 (70%), Gaps = 18/255 (7%) Strand=Plus/Plus Query 687 CTGGTTTTATACACGTGGTGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 746 ||||||||| || ||||||||||| || ||| | | |||||||| | ||| || Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 128955 Query 747 AGGGAATA--ATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGT 804 |||| | || ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 128956 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCT 129015 Query 805 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTTA-T 860 |||| ||| | | || || || ||| || || | |||| || || || ||| | Sbjct 129016 GTAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACT 129072 Query 861 GGCT---CCATTAATTAATTGTATTCATGTAGTTGTAATGTCTAATTTTATGCCTGACTT 917 || | | || ||| || |||||||| ||||| ||| ||||||| || |||| | Sbjct 129073 GGTTTTGCTATGAATAAA----ATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTA 129128 Query 918 TGAGAAGATTAGTCA 932 || ||| ||||| || Sbjct 129129 TGCGAAAATTAGCCA 129143 Score = 93.3 bits (102), Expect = 4e-16 Identities = 177/253 (70%), Gaps = 17/253 (7%) Strand=Plus/Plus Query 687 CTGGTTTTATACACGTGGTGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 746 ||||||||| | ||||||||||| || ||| | | |||||||| | ||| || Sbjct 126589 CTGGTTTTACGCTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTAAGT--GTCTGTT 126646 Query 747 AGGGAATA--ATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGT 804 |||| | || ||||||||||||| ||| ||||||| |||| ||||| ||||| | Sbjct 126647 CTGGAAAAGAATGTTGTATTTGATATTCCTTGTGATAAACAGGAATATCTTCAGTACTCT 126706 Query 805 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGTAATAAGTATGAGCCTCTTA-TGG 862 |||| |||| | | || || || ||| || ||| | | |||| || ||| ||| Sbjct 126707 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGT-CTGATAATGAACCAGTTACTGG 126762 Query 863 CT---CCATTAATTAATTGTATTCATGTAGTTGTAATGTCTAATTTTATGCCTGACTTTG 919 | | || ||| || |||||||| ||||| ||| ||||||| ||||||| | || Sbjct 126763 TTTTGCTATGAATAAA----ATTCATGTTGTTGTTATGGCTAATTTCTTGCCTGATTATG 126818 Query 920 AGAAGATTAGTCA 932 ||| ||||| || Sbjct 126819 CGAAAATTAGCCA 126831 Score = 91.5 bits (100), Expect = 1e-15 Identities = 175/252 (69%), Gaps = 16/252 (6%) Strand=Plus/Plus Query 687 CTGGTTTTATACACGTGGTGGTTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 746 ||||||||| || || |||||||| || ||| | | |||||||| | ||| || Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 131262 Query 747 AGGGAATA--ATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGT 804 |||| | || ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 131263 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 131322 Query 805 TTAATAGAGATGTTTAAGGATAGGTTAATAGTTAGTAATAAGTATGAGCCTCTTA-TGGC 863 |||| |||| | | || | | | ||| | |||| ||||| || ||| ||| Sbjct 131323 GTAATCGAGAAGATGAA--AAAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGT 131378 Query 864 T---CCATTAATTAATTGTATTCATGTAGTTGTAATGTCTAATTTTATGCCTGACTTTGA 920 | | || ||| || |||||||| ||||| ||| | ||||| ||||||| | || Sbjct 131379 TTTGCTATGAATAAA----ATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGC 131434 Query 921 GAAGATTAGTCA 932 ||| ||||| || Sbjct 131435 GAAAATTAGCCA 131446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4204653115936