Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_009563.1 Length=1372 Score E Sequences producing significant alignments: (Bits) Value seq798406 89.7 4e-15 >seq798406 Length=249124 Score = 89.7 bits (98), Expect = 4e-15 Identities = 229/340 (67%), Gaps = 13/340 (4%) Strand=Plus/Plus Query 587 GACCCAGATGATAGAACTATCTTCTGGGTGTATGGCCCTACTGGTGGGGAAGGAAATCCA 646 || |||||||| |||| || ||||||||| |||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 647 CGTTTTGCCCGTGA--CTGTATAGAAGTGGGTCCCTGGTTCTATTCACGTGGCGGCTCTG 704 | ||| | || || | ||| | || |||||| || | ||| || |||| Sbjct 128869 GAGTATGCG-GAGAAGCT-TGTAGCTGAAGG---CTGGTTTTAGACTAATGGTGGTTCTG 128923 Query 705 CGGATAATGTTAGTTATCAGTATGTAGGATGTT-TAGGAAATAATATTGTATTTGATATT 763 | ||| | | ||||||||||| | |||| | | ||| ||| |||||||||||||| Sbjct 128924 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 128982 Query 764 CCTCGTGATAAGAAGGATTATCTGCAATATAGTTTAATTGAGATGTTTAAGGATAGATTA 823 ||||||||||| |||| |||||||| || | |||| ||| | | || || ||| | Sbjct 128983 CCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATT 129042 Query 824 AT--AGTTAGTAACAAGTATGAGCCTTTGATGGCTCCTCTTGTTAATTGTATTCATGTAG 881 | ||| | | || || || || | | | | | | | ||| |||||||| | Sbjct 129043 GTGCAGT--CTGATAAATAAGAACCAGTTACTGGTTTTGCTATGAATAAAATTCATGTTG 129100 Query 882 TAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAG 921 | |||||| ||||||| | |||||| || ||| ||||| Sbjct 129101 TTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAG 129140 Score = 82.4 bits (90), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 719 TATCAGTATGTAGGATGTT-TAGGAAATAATATTGTATTTGATATTCCTCGTGATAAGAA 777 ||||||||||| | |||| | | ||| ||| ||||||||||||||||||||||||| | Sbjct 127780 TATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACA 127838 Query 778 GGATTATCTGCAATATAGTTTAATTGAGATGTTTAAGGATAGATTAAT--AGTTAGTAAC 835 ||| ||||| || || | |||| |||| | | || || ||| | | ||| | | Sbjct 127839 GGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATTGTGCAGTCCG--AT 127896 Query 836 AAGTATGAGCCTTTGATGGCTCCTCTTGTTAATTGTATTCATGTAGTAGTTATGTCTAAT 895 || ||||| || | | | | | | | ||| |||||| || |||| ||||||| Sbjct 127897 AAATATGAACCAGTTACTGGTTTTGCTATGAATAAAATTCAT---GTTGTTACGTCTAAT 127953 Query 896 TTTCTCCCTGATTTTGAGAAGATTAG 921 || | ||||||| || ||| ||||| Sbjct 127954 TTCTTGCCTGATTATGCGAAAATTAG 127979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4201512971712