Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_009564.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value seq798406 111 1e-21 >seq798406 Length=249124 Score = 111 bits (122), Expect = 1e-21 Identities = 185/258 (72%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 688 CTGGTTCTACACACGTGGTGGTTCTGCTGATAATGTCAGTTATCAGTACATAGGT-TGTT 746 |||||| ||||| ||||||||||| || ||| ||| |||||||| | || |||| Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTA--TGCGTCTGTT 130109 Query 747 TAGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGT 805 || || || ||||||||||||| ||||||||||| |||| ||||| || || | Sbjct 130110 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 130169 Query 806 TTAATAGAGATGTTTAAGGATAGGTTAATAGTT-AGTA--ATAAGTATGAGCC-GCTAAT 861 |||| |||| | | || || || ||| || ||| |||| ||||| || | || | Sbjct 130170 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACT 130226 Query 862 GGCCCCGCTTGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTATGA 921 || ||| | ||| |||||||| || |||||||||||||| | ||||||||||| Sbjct 130227 GGTTTTGCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGA 130285 Query 922 TAAGATTAGCAGTGATAG 939 || ||| || | |||| Sbjct 130286 GAAAATTCGCCATCATAG 130303 Score = 96.9 bits (106), Expect = 3e-17 Identities = 176/249 (71%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 688 CTGGTTCTACACACGTGGTGGTTCTGCTGATAATGTCAGTTATCAGTACATAGGTTGTTT 747 |||||| ||||| ||||||||||| || ||| ||| |||||||| | | |||| Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 748 AGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGTT 806 || || || ||||||||||||| ||||||||||| |||| ||||| || || | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 807 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTATGAGCC-GCTAATG 862 |||| |||| | | || || || ||| || ||| |||| ||||| || | || || Sbjct 127859 TAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTG 127915 Query 863 GCCCCGCTTGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTATGAT 922 | || | | ||| |||||| || |||| ||||||||| | |||||||||| Sbjct 127916 GTTTTGC-TATGAATAAAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGCG 127971 Query 923 AAGATTAGC 931 || |||||| Sbjct 127972 AAAATTAGC 127980 Score = 93.3 bits (102), Expect = 4e-16 Identities = 175/249 (70%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 688 CTGGTTCTACACACGTGGTGGTTCTGCTGATAATGTCAGTTATCAGTACATAGGTTGTTT 747 |||||| || || ||||||||||| || ||| ||| |||||||| | | |||| Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 128956 Query 748 AGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGTT 806 || || || ||||||||||||| ||||||||||| |||| |||||||| || | Sbjct 128957 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTG 129016 Query 807 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCC-GCTAATG 862 |||| ||| | | || || || ||| || || | |||| || || || | || || Sbjct 129017 TAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTG 129073 Query 863 GCCCCGCTTGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTATGAT 922 | || | | ||| |||||||| || |||||| ||||||| | ||||||||| Sbjct 129074 GTTTTGC-TATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCG 129132 Query 923 AAGATTAGC 931 || |||||| Sbjct 129133 AAAATTAGC 129141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4220353837056