Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_010620.1 Length=1388 Score E Sequences producing significant alignments: (Bits) Value seq798406 93.3 4e-16 >seq798406 Length=249124 Score = 93.3 bits (102), Expect = 4e-16 Identities = 168/237 (71%), Gaps = 18/237 (8%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTACCAGTATATAGGGTGT-T 734 |||||| |||||| ||| || |||| | || ||| || |||||| | || | | Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTAT---GCGTCTGT 130108 Query 735 TAGGGAATAACA---TTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATACA 791 | |||| |||| ||||||||||||| ||||||||||| |||| ||||| || ||| Sbjct 130109 TCTGGAA-AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACT 130167 Query 792 GTTTAATAGAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTACGAGCCTCTTA- 848 | |||| |||| | | || || ||| | || ||| | |||| || || || ||| Sbjct 130168 CTGTAATCGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTAC 130225 Query 849 TGG--CTCCTATGATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGA 903 ||| | |||||| ||| |||||||| || |||||||||||||| | ||||| Sbjct 130226 TGGTTTTGCTATGAATAA---AATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGA 130279 Score = 87.8 bits (96), Expect = 2e-14 Identities = 174/250 (70%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTACCAGTATATAGGGTGTTT 735 |||||| || ||| ||| || |||| | || ||| || |||||| | | |||| Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 128956 Query 736 AGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 794 || || || ||||||||||||| ||||||||||| |||| |||||||| ||| | Sbjct 128957 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTG 129016 Query 795 TAATAGAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTACGAGCCTCTTA-TGG 851 |||| ||| | | || || ||| | || ||| | |||| || || || ||| ||| Sbjct 129017 TAATCAAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAGAACCAGTTACTGG 129074 Query 852 --CTCCTATGATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGACACGGC 909 | |||||| ||| |||||||| || |||||| ||||||| | |||| || Sbjct 129075 TTTTGCTATGAATAA---AATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGC 129131 Query 910 GAAGATTAGC 919 ||| |||||| Sbjct 129132 GAAAATTAGC 129141 Score = 86.0 bits (94), Expect = 5e-14 Identities = 174/250 (70%), Gaps = 15/250 (6%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTACCAGTATATAGGGTGTTT 735 |||||| |||||| ||| || |||| | || ||| || |||||| | | |||| Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 736 AGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 794 || || || ||||||||||||| ||||||||||| |||| ||||| || ||| | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 795 TAATAGAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTACGAGCCTCTTA-TGG 851 |||| |||| | | || || ||| | || ||| | |||| || || || ||| ||| Sbjct 127859 TAATCGAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGG 127916 Query 852 --CTCCTATGATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGACACGGC 909 | |||||| ||| |||||| || |||| ||||||||| | ||||| || Sbjct 127917 TTTTGCTATGAATAA---AATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGC 127970 Query 910 GAAGATTAGC 919 ||| |||||| Sbjct 127971 GAAAATTAGC 127980 Score = 75.2 bits (82), Expect = 1e-10 Identities = 170/248 (69%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTACCAGTATATAGGGTGTTT 735 |||||| |||||| || || |||| | || ||| || |||||| | | |||| Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 131263 Query 736 AGGGAAT-AACATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 794 || || || ||||||||||||| ||||||||||| |||| ||||| || ||| | Sbjct 131264 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 131323 Query 795 TAATAGAGATGTTTAAGGATAGATTAGTAGTTAGTAATAAGTACGAGCCTCTTA-TGG-- 851 |||| |||| | | || | | | | ||| | |||| || || || ||| ||| Sbjct 131324 TAATCGAGAAGATGAA--AAAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGTT 131379 Query 852 CTCCTATGATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGACACGGCGA 911 | |||||| ||| |||||||| || |||||| | ||||| | ||||| |||| Sbjct 131380 TTGCTATGAATAA---AATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGCGA 131436 Query 912 AGATTAGC 919 | |||||| Sbjct 131437 AAATTAGC 131444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4251755279296