Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1440344 111 1e-19 seq335002 109 4e-19 seq613168 107 1e-18 seq745658 105 5e-18 seq1265268 102 6e-17 seq1412493 96.9 3e-15 seq1165397 82.4 6e-11 >seq1440344 Length=131763 Score = 111 bits (122), Expect = 1e-19 Identities = 345/521 (66%), Gaps = 25/521 (5%) Strand=Plus/Plus Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTC-TGTTGA 66109 ||||||| ||||| ||||| ||||| || || | || || ||||||||| || ||| Sbjct 99722 TACTCGATCATTTCTGTGCAAAGATT--TGAAGACTTGATTGTTCCCAAATTCCTGCTGA 99779 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||| | |||||||||| ||| || ||| |||| || || | ||| Sbjct 99780 TTACTCTTCCTGTTGCACGAGTCCTTGTACAACATATAAGGATTGCCAGTTTCTATTTGA 99839 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTG 66229 || || | || || ||| || || | |||| ||| |||| | ||| Sbjct 99840 GATTCTAAAATTGCAAACCAGAGTTTCTAAGCTT-----GTACA-ACCTTCCTAGCCTTG 99893 Query 66230 CGTTCG---TAATGTT--CGTAGAGGTGTTCGAAGGATTCACCCCA-TACTTCGGACAGA 66283 | | | || || | || || | || || ||| ||||| || | | | Sbjct 99894 CCCTGCAGCTCATTTTAACATATAGTTTATCAAAATCTTCCCCCCAATAGTCTGCTAATG 99953 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC--- 66340 || ||| ||| | ||||| | || |||||| | ||| ||| ||| || ||| Sbjct 99954 CA-GGAGACTCATTAGGACAGAACAATGACCAAGTAGCAT--TGTCCTAGACT-CGCTTT 100009 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 ||||| ||||| || |||| || | ||||| | || | ||| | | || || || Sbjct 100010 ATAAAGAGATCTGGACTCCATAGACCATAGAAAAAATATCTTGCACTGTTTTCTTCCTTG 100069 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 || || ||||| | ||| || | || ||||| || || ||||||||||| |||| ||| Sbjct 100070 CCATGGTTTTTTCTCAAATCCAAAAAGTCAAA-ATATCAGCATGCCATGGCTCCAAGTAT 100128 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 | ||||| || ||| | | |||||| || ||||| || || ||| || | || || Sbjct 100129 ACAGCGAAGGAACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGTGATCAGTATCATTA 100188 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || ||||||||||| | || | || || ||| ||||||| Sbjct 100189 AACACACGCAACATTAGCACAATACCATTTGATGTGCCATT 100229 >seq335002 Length=192544 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| || || | | ||| || || | || ||||| ||||||| | ||| || | Sbjct 28083 CATAAAGAGGTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTT 28024 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || || || || | ||| || | |||||||| | || ||||||||||| || ||||| Sbjct 28023 CCCATGGTTCTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTA 27964 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 ||||| || | ||| | | |||||| |||||||| || || || ||||| || || Sbjct 27963 CATGGCAAATGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATT 27904 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| || | |||||| || || | || || ||| | ||||| || || Sbjct 27903 GAATACCCTCAACATTGGCACAATACCATTCGATGTACCATTAGTTCC 27856 >seq613168 Length=425085 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| | || || || | ||||| | ||| | ||| | | || || | Sbjct 409289 CATAAAGAGATCTAGAATACATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTT 409230 Query 66400 GCCGTGATTTTTG--CGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGG 66457 ||| || ||||| | ||| | | || ||||| || |||||||||||||| |||| | Sbjct 409229 GCCATGGTTTTTTTTCTCAAAACCAAAAAGTCAAA-ATATCGGCATGCCATGGCTCCAAG 409171 Query 66458 TAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTG 66517 || || ||||| | ||| | | |||||| || ||||| || || |||||||| || Sbjct 409170 TATATAGCGAAGGCACCCTTGCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCA 409111 Query 66518 TTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || || ||||||||||| || || | || || ||| ||||||| || || Sbjct 409110 TTAAACACACGCAACATTGGCACAATACCATTTGATGTGCCATTTGTTCC 409061 >seq745658 Length=337835 Score = 105 bits (116), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| || ||||| || | ||||| | ||| | ||| | | || || | Sbjct 230479 CATAAAGAGATCTGGAATCCATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTT 230538 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || ||||| ||| || | || ||||| || || ||||||||||| || | ||| Sbjct 230539 GCCATGGTTTTTTATCAAATCCAAAAAGTCAAA-ATATCAGCATGCCATGGATCGAAGTA 230597 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || | ||| | ||| | | |||||| || ||||| || || |||| ||| || || Sbjct 230598 TATAGTGAAGGCACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGCAAGCAGTATCATT 230657 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||| ||||||| || || | ||||| ||| ||||||| || || Sbjct 230658 AAACACATGCAACATTGGCACAATACCGTTTGATGTGCCATTTGTTCC 230705 >seq1265268 Length=178387 Score = 102 bits (112), Expect = 6e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| |||| || ||||| | | ||||| | || | ||||| | || || | Sbjct 25976 CATAAAGAGATATGGAATCCATATACCATAGAACAAATATCTTGCTCTATTTTCTTCCTT 25917 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || ||||| | ||| | | || ||||| || || ||||||||||| |||| ||| Sbjct 25916 GCCATGGTTTTTTCTCAAATTCAAAAAGTCAAA-ATATCAGCATGCCATGGCTCCAAGTA 25858 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | | ||| | ||| | | |||||| || ||||| || || |||||||| || || Sbjct 25857 TACAGTGAAGGCACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATT 25798 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||||||||||| || || | || || ||| ||||||| || || Sbjct 25797 AAACACACGCAACATTGGCACAATACCATTTGATGTGCCATTTGTTCC 25750 >seq1412493 Length=108133 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC-TCGTTGCTCCTCAA 66398 |||||| ||||| || ||||| || ||||| | || | ||| | ||| || || Sbjct 68105 CATAAAGAGATCTGGAATCCATAGACTATAGAACAAATATCTTGCCTTGTTT-TCTTCCT 68047 Query 66399 TGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 |||| || ||||| | ||| || | || ||||| || || ||||||||||| |||| || Sbjct 68046 TGCCATGTTTTTTTCTCAAATCCAAAAAGTCAAA-ATATCAGCATGCCATGGCTCCAAGT 67988 Query 66459 AGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGT 66518 | | |||| | ||| | | |||||| || ||||| || || |||||||| || | Sbjct 67987 ATACAACGAAGGCACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCAT 67928 Query 66519 TGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 | || |||| |||||| || | | || || ||| ||||||| || || Sbjct 67927 TAAACACACACAACATTGGCATAATACCATTTGATGTGCCATTTGTTCC 67879 >seq1165397 Length=78751 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 |||||||||||| |||||||| | || || ||||||||||| || || ||||||| | Sbjct 59101 GCAATCTTTTGGCTGAAGAAAAGGGGGCTGATGCCCGGTCTCACTTTTTCCAATGAGCTC 59042 Query 61603 ATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || ||| | || || ||| | |||||||| ||||| Sbjct 59041 ATTTCAAGGGATGAAGGCCTCCATTGTGACTTTGC 59007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389037918152960