Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_013103.1 Length=1369 Score E Sequences producing significant alignments: (Bits) Value seq798406 104 2e-19 >seq798406 Length=249124 Score = 104 bits (114), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 745 AAATAATATTGTATTTGATATCCCTCGTGATAAGAGGGATTATCTTCAGTATAGTTTAAT 804 ||| ||| ||||||||||||| ||||||||||| ||| ||||||||||| | |||| Sbjct 130115 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 130174 Query 805 TGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCC 861 || | | | || || ||| | | ||| | |||| ||||| || ||| ||| | Sbjct 130175 CGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTT 130232 Query 862 GCTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGAT 921 |||| | ||| |||||||| || |||||||||||||| | ||||||| |||||| || Sbjct 130233 GCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAAT 130291 Query 922 TAGCATTGATAG 933 | || | |||| Sbjct 130292 TCGCCATCATAG 130303 Score = 87.8 bits (96), Expect = 2e-14 Identities = 133/184 (72%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 745 AAATAATATTGTATTTGATATCCCTCGTGATAAGAGGGATTATCTTCAGTATAGTTTAAT 804 ||| ||| ||||||||||||| ||||||||||| ||| ||||||||||| | |||| Sbjct 127803 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 127862 Query 805 TGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCC 861 || | | | || || ||| | | ||| | |||| ||||| || ||| ||| | Sbjct 127863 CGAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGGTTTT 127920 Query 862 GCTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGAT 921 |||| | ||| |||||| || |||| ||||||||| | ||||||| || ||| || Sbjct 127921 GCTA-TGAATAAAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGCGAAAAT 127976 Query 922 TAGC 925 |||| Sbjct 127977 TAGC 127980 Score = 84.2 bits (92), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 7/183 (4%) Strand=Plus/Plus Query 745 AAATAATATTGTATTTGATATCCCTCGTGATAAGAGGGATTATCTTCAGTATAGTTTAAT 804 ||| ||| ||||||||||||| ||| ||||||| ||| ||||||||||| | |||| Sbjct 126652 AAAGAATGTTGTATTTGATATTCCTTGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 126711 Query 805 TGAAATGTTTAAGGATAGATTAATAGT-TAGTAATAAGTATGAGCC-TTTAATGGCTCCG 862 || | | | || || || ||| || ||| | | |||| || ||| ||| | | Sbjct 126712 CGAGAAGATGAAAGACAG---AATTGTGCAGT-CTGATAATGAACCAGTTACTGGTTTTG 126767 Query 863 CTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATT 922 ||| | ||| |||||||| || |||||| ||||||| | ||||||| || ||| ||| Sbjct 126768 CTA-TGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGCCTGATTATGCGAAAATT 126826 Query 923 AGC 925 ||| Sbjct 126827 AGC 126829 Score = 80.6 bits (88), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 745 AAATAATATTGTATTTGATATCCCTCGTGATAAGAGGGATTATCTTCAGTATAGTTTAAT 804 ||| ||| ||||||||||||| ||||||||||| ||| ||||| ||||| | |||| Sbjct 128961 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAAT 129020 Query 805 TGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCC 861 | | | | || || ||| | | ||| | |||| || || || ||| ||| | Sbjct 129021 CAAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAGAACCAGTTACTGGTTTT 129078 Query 862 GCTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGAT 921 |||| | ||| |||||||| || |||||| ||||||| | |||||| || ||| || Sbjct 129079 GCTA-TGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAAT 129137 Query 922 TAGC 925 |||| Sbjct 129138 TAGC 129141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4192092539040