Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_013593.1 Length=1387 Score E Sequences producing significant alignments: (Bits) Value seq798406 107 2e-20 >seq798406 Length=249124 Score = 107 bits (118), Expect = 2e-20 Identities = 183/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTATCAGTATATAGGATGTTT 735 |||||| |||||| ||| || |||| | || ||| ||||||||| | |||| Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTC 130110 Query 736 AGGAAAT-AATATTGTATTCGATATTCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 794 ||||| ||| ||||||| ||||||||||||||||| |||| ||||| || ||| | Sbjct 130111 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 130170 Query 795 TAATAGAAATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCTCTTA-TGG 851 |||| || | | | || || ||| | || ||| | |||| ||||| || ||| ||| Sbjct 130171 TAATCGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGG 130228 Query 852 --CCCCTATGATTAGTTGTATTCATGTAGTTGTTATGTCTAATTTTCTTCCTGACATGGA 909 |||||| || |||||||| ||||||||||||||||| | ||||| || Sbjct 130229 TTTTGCTATGAATA---AAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGA 130285 Query 910 GAAAATTAGCAGTGATAG 927 ||||||| || | |||| Sbjct 130286 GAAAATTCGCCATCATAG 130303 Score = 96.9 bits (106), Expect = 3e-17 Identities = 221/323 (68%), Gaps = 15/323 (5%) Strand=Plus/Plus Query 603 TCTTCTGGGTGTATGGGCCCGATGGGGGAGAAGGAAAATCGACGTTCGCGCGCGATCTTT 662 || ||||||||| || || || || || |||||||| || || ||| | ||| Sbjct 128828 TCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACGGAGTATGCGGAGAAGCTTG 128887 Query 663 TCAGAAGTGGGACCTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTATCAGT 722 | || | || |||||| || ||| ||| || |||| | || ||| ||||||| Sbjct 128888 T-AGCTGAAGG--CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGT 128944 Query 723 ATATAGGATGTTTAGGAAAT-AATATTGTATTCGATATTCCTCGTGATAAGAAGGATTAT 781 || | | |||| ||||| ||| ||||||| ||||||||||||||||| |||| ||| Sbjct 128945 ATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATAT 129003 Query 782 CTGCAATACAGTTTAATAGAAATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATG 839 ||||| ||| | |||| | | | | || || ||| | || ||| | |||| || | Sbjct 129004 CTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAG 129061 Query 840 AGCCTCTTA-TGG--CCCCTATGATTAGTTGTATTCATGTAGTTGTTATGTCTAATTTTC 896 | || ||| ||| |||||| || |||||||| ||||||||| ||||||| Sbjct 129062 AACCAGTTACTGGTTTTGCTATGAATA---AAATTCATGTTGTTGTTATGGCTAATTTCT 129118 Query 897 TTCCTGACATGGAGAAAATTAGC 919 | |||| | |||||||||| Sbjct 129119 TGTCTGATTATGCGAAAATTAGC 129141 Score = 95.1 bits (104), Expect = 1e-16 Identities = 176/250 (70%), Gaps = 15/250 (6%) Strand=Plus/Plus Query 676 CTGGTTCTACACTCGTGGAGGATCTGCAGACAACGTCAGCTATCAGTATATAGGATGTTT 735 |||||| |||||| ||| || |||| | || ||| ||||||||| | | |||| Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 736 AGGAAAT-AATATTGTATTCGATATTCCTCGTGATAAGAAGGATTATCTGCAATACAGTT 794 ||||| ||| ||||||| ||||||||||||||||| |||| ||||| || ||| | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 795 TAATAGAAATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCTCTTA-TGG 851 |||| || | | | || || ||| | || ||| | |||| ||||| || ||| ||| Sbjct 127859 TAATCGAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGG 127916 Query 852 --CCCCTATGATTAGTTGTATTCATGTAGTTGTTATGTCTAATTTTCTTCCTGACATGGA 909 |||||| || |||||| ||||||| ||||||||| | ||||| | Sbjct 127917 TTTTGCTATGAATA---AAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGC 127970 Query 910 GAAAATTAGC 919 |||||||||| Sbjct 127971 GAAAATTAGC 127980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4248615135072