Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_013803.1 Length=1366 Score E Sequences producing significant alignments: (Bits) Value seq798406 93.3 4e-16 >seq798406 Length=249124 Score = 93.3 bits (102), Expect = 4e-16 Identities = 133/183 (73%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 752 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAGTACAGTTTAATA 811 || ||| ||||||||||||||||||||||||| |||| ||||| |||||| | |||| Sbjct 130116 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 130175 Query 812 GAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCTCCC 868 |||| | | || || ||| | | ||| | |||| ||||| || | | ||| | Sbjct 130176 GAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTTG 130233 Query 869 TTAATTAATAGTATCCATGTAGTTGTGATGTCTAATTTTCTCCCAGACTTTGAGAAGATT 928 | || |||| || ||||| ||||| ||||||||||| | || || | |||||| ||| Sbjct 130234 CT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAATT 130292 Query 929 AGC 931 || Sbjct 130293 CGC 130295 Score = 89.7 bits (98), Expect = 4e-15 Identities = 231/342 (68%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 596 GACCCAGATGACCGCACTATCTTCTGGGTTTACGGACCTGATGGTGGGGAAGGAAAATCC 655 || ||||||||| | | || ||||||| | ||| ||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 656 ACCTTTGCC-AGAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGTGGCTCTG 713 | ||| ||| | |||| | |||| |||||| || || |||||| |||| Sbjct 128869 GAGTATGCGGAGAAGCTTGTAGCTGAAGG-----CTGGTTTTAGACTAATGGTGGTTCTG 128923 Query 714 CAGATAATGTTAGCTACCAGTACATAGGATGTTTAGGGAAT-AATATTGTATTTGATATT 772 | ||| | | || ||||| | | |||| || || ||| |||||||||||||| Sbjct 128924 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 128982 Query 773 CCTCGTGATAAGAAGGATTATCTACAGTACAGTTTAATAGAGATGTTTAAGGATAGATTA 832 ||||||||||| |||| ||||| |||||| | |||| ||| | | || || ||| | Sbjct 128983 CCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATT 129042 Query 833 AT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCTCCCTTAATTAATAGTATCCATGTA 889 | ||| | |||| || || || | | ||| | | || |||| || ||||| Sbjct 129043 GTGCAGT--CTGATAAATAAGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCATGTT 129099 Query 890 GTTGTGATGTCTAATTTTCTCCCAGACTTTGAGAAGATTAGC 931 ||||| ||| ||||||| | | || | || ||| |||||| Sbjct 129100 GTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAGC 129141 Score = 84.2 bits (92), Expect = 2e-13 Identities = 230/342 (67%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 596 GACCCAGATGACCGCACTATCTTCTGGGTTTACGGACCTGATGGTGGGGAAGGAAAATCC 655 || ||||||||| | | || ||||||| | ||| ||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 656 ACCTTTGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGTGGCTCTG 713 | || | || | |||| | |||| |||||| || || |||||| |||| Sbjct 127711 GAGTACGCAAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 127765 Query 714 CAGATAATGTTAGCTACCAGTACATAGGATGTTTAGGGAAT-AATATTGTATTTGATATT 772 | ||| | | || ||||| | | |||| || || ||| |||||||||||||| Sbjct 127766 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 127824 Query 773 CCTCGTGATAAGAAGGATTATCTACAGTACAGTTTAATAGAGATGTTTAAGGATAGATTA 832 ||||||||||| |||| ||||| |||||| | |||| |||| | | || || ||| | Sbjct 127825 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATT 127884 Query 833 AT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCTCCCTTAATTAATAGTATCCATGTA 889 | ||| | |||| ||||| || | | ||| | | || |||| || ||| Sbjct 127885 GTGCAGTCCG--ATAAATATGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCAT--- 127938 Query 890 GTTGTGATGTCTAATTTTCTCCCAGACTTTGAGAAGATTAGC 931 ||||| | ||||||||| | || || | || ||| |||||| Sbjct 127939 GTTGTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAGC 127980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4182672106368