Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_015327.1 Length=1396 Score E Sequences producing significant alignments: (Bits) Value seq798406 98.7 8e-18 >seq798406 Length=249124 Score = 98.7 bits (108), Expect = 8e-18 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGATCTGCAGACAACGTCAGCTATCAGTATATAGGATGTTT 748 |||||| || || ||| || |||| | || ||| ||||||||| | |||| Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTC 130110 Query 749 AGGGAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGTT 807 || || ||| ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 130111 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 130170 Query 808 TAATAGAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCCTCTTA-TGG 864 |||| |||| | | || || ||| | | ||| | |||| ||||| || ||| ||| Sbjct 130171 TAATCGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGG 130228 Query 865 CCCCTCTAATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 924 || || ||| |||||||| || |||||||||||||| | ||||||| ||||| Sbjct 130229 TTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGA 130287 Query 925 AGATT 929 | ||| Sbjct 130288 AAATT 130292 Score = 86.0 bits (94), Expect = 5e-14 Identities = 172/247 (70%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGATCTGCAGACAACGTCAGCTATCAGTATATAGGATGTTT 748 |||||| || || ||| || |||| | || ||| ||||||||| | | |||| Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 127798 Query 749 AGGGAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGTT 807 || || ||| ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 127799 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 127858 Query 808 TAATAGAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCCTCTTA-TGG 864 |||| |||| | | || || ||| | | ||| | |||| ||||| || ||| ||| Sbjct 127859 TAATCGAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGG 127916 Query 865 CCCCTCTAATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 924 || || ||| |||||| || |||| ||||||||| | ||||||| || || Sbjct 127917 TTTTGCT-ATGAATAAAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGCGA 127972 Query 925 AGATTAG 931 | ||||| Sbjct 127973 AAATTAG 127979 Score = 84.2 bits (92), Expect = 2e-13 Identities = 171/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 689 CTGGTTCTATACACGTGGAGGATCTGCAGACAACGTCAGCTATCAGTATATAGGATGTTT 748 |||||| || || ||| || |||| | || ||| ||||||||| | | |||| Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 128956 Query 749 AGGGAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGTT 807 || || ||| ||||||||||||| ||||||||||| |||| ||||| ||||| | Sbjct 128957 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTG 129016 Query 808 TAATAGAGATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCCTCTTA-TGG 864 |||| ||| | | || || ||| | | ||| | |||| || || || ||| ||| Sbjct 129017 TAATCAAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAGAACCAGTTACTGG 129074 Query 865 CCCCTCTAATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 924 || || ||| |||||||| || |||||| ||||||| | |||||| || || Sbjct 129075 TTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGA 129133 Query 925 AGATTAG 931 | ||||| Sbjct 129134 AAATTAG 129140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4276876433088