Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_018082.1 Length=1376 Score E Sequences producing significant alignments: (Bits) Value seq798406 111 1e-21 >seq798406 Length=249124 Score = 111 bits (122), Expect = 1e-21 Identities = 177/246 (72%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 688 CTGGTTTTATACACGTGGTGGCTCTGCAGATAATGTTAGCTACCAGTATATAGGATGTTT 747 ||||||||| || |||||| |||| | ||| | | || |||||| | |||| Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTC 130110 Query 748 AGGAAAT-AATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTT 806 ||||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 130111 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 130170 Query 807 TAATAGAGATGTTTAAAGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTTA-TG 862 |||| |||| | | ||||| || ||| || || | |||| ||||| || ||| || Sbjct 130171 TAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTG 130227 Query 863 GCTCCCTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTTGAG 922 | | | || ||| ||||||||||| |||||||||||||| | || || | |||| Sbjct 130228 GTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAG 130286 Query 923 AAGATT 928 || ||| Sbjct 130287 AAAATT 130292 Score = 107 bits (118), Expect = 2e-20 Identities = 234/340 (69%), Gaps = 13/340 (4%) Strand=Plus/Plus Query 596 GACCCAGATGACCGCACTATCTTCTGGGTGTATGGACCTGATGGTGGGGAAGGAAAATCC 655 || ||||||||| | | || ||||||||| || ||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 656 ACCTTTGCCAGAGACCTGTATAGAAGTGGGTCCTGGTTTTATACACGTGGTGGCTCTGCA 715 | ||| |||| | ||| | || ||||||||| || |||||| |||| Sbjct 128869 GAGTATGCG-GAGAAGCTTGTAGCTGAAGG--CTGGTTTTAGACTAATGGTGGTTCTGTT 128925 Query 716 GATAATGTTAGCTACCAGTATATAGGATGTTTAGGAAAT-AATATTGTATTTGATATTCC 774 | ||| | | || |||||| | | |||| ||||| ||| |||||||||||||||| Sbjct 128926 GCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCC 128984 Query 775 TCGTGATAAGAAGGATTATCTACAATACAGTTTAATAGAGATGTTTAAAGATAGGTTAAT 834 ||||||||| |||| ||||| || ||| | |||| ||| | | ||||| || ||| Sbjct 128985 TCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAG---AAT 129041 Query 835 AGT-TAG--TAATAAGTATGAGCCTCTTA-TGGCTCCCTTAATTAATTGTATTCATGTTG 890 || || | |||| || || || ||| ||| | | || ||| |||||||||| Sbjct 129042 TGTGCAGTCTGATAAATAAGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCATGTTG 129100 Query 891 TAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAGATTAG 930 | |||||| ||||||| | | || | || ||| ||||| Sbjct 129101 TTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAG 129140 Score = 100 bits (110), Expect = 2e-18 Identities = 233/340 (69%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 596 GACCCAGATGACCGCACTATCTTCTGGGTGTATGGACCTGATGGTGGGGAAGGAAAATCC 655 || ||||||||| | | || ||||||||| || ||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 656 ACCTTTGCCAGAGACCTGTATAGAAGTGGGTCCTGGTTTTATACACGTGGTGGCTCTGCA 715 | || | | || | ||| | || ||||||||| || |||||| |||| Sbjct 127711 GAGTACGCAAAGAAGCT-TGTAGCTGAAGG--CTGGTTTTACACTAATGGTGGTTCTGTT 127767 Query 716 GATAATGTTAGCTACCAGTATATAGGATGTTTAGGAAAT-AATATTGTATTTGATATTCC 774 | ||| | | || |||||| | | |||| ||||| ||| |||||||||||||||| Sbjct 127768 GCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCC 127826 Query 775 TCGTGATAAGAAGGATTATCTACAATACAGTTTAATAGAGATGTTTAAAGATAGGTTAAT 834 ||||||||| |||| ||||| || ||| | |||| |||| | | ||||| || ||| Sbjct 127827 TCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAG---AAT 127883 Query 835 AGT-TAGT--AATAAGTATGAGCCTCTTA-TGGCTCCCTTAATTAATTGTATTCATGTTG 890 || ||| |||| ||||| || ||| ||| | | || ||| ||||||||| Sbjct 127884 TGTGCAGTCCGATAAATATGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCATGTT- 127941 Query 891 TAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAGATTAG 930 |||| ||||||||| | || || | || ||| ||||| Sbjct 127942 --GTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAG 127979 Score = 89.7 bits (98), Expect = 4e-15 Identities = 171/245 (70%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 688 CTGGTTTTATACACGTGGTGGCTCTGCAGATAATGTTAGCTACCAGTATATAGGATGTTT 747 ||||||||| || || ||| |||| | ||| | | || |||||| | | |||| Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 131263 Query 748 AGGAAAT-AATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTT 806 ||||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 131264 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTG 131323 Query 807 TAATAGAGATGTTTAAAGATAGGTTAATAGTTAGTAATAAGTATGAGCCTCTTA-TGGCT 865 |||| |||| | | ||| | || ||| | |||| ||||| || ||| ||| | Sbjct 131324 TAATCGAGAAGATGAAAAAATTGT--GCAGT--CTGATAAATATGAACCAGTTACTGGTT 131379 Query 866 CCCTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTTGAGAAG 925 | || ||| ||||||||||| |||||| | ||||| | || || | || ||| Sbjct 131380 TTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGCGAAA 131438 Query 926 ATTAG 930 ||||| Sbjct 131439 ATTAG 131443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4214073548608