Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_018628.1 Length=1478 Score E Sequences producing significant alignments: (Bits) Value seq798406 78.8 8e-12 >seq798406 Length=249124 Score = 78.8 bits (86), Expect = 8e-12 Identities = 179/261 (69%), Gaps = 14/261 (5%) Strand=Plus/Plus Query 682 TGGTTCTACACCCGTGGTGGATCTGCAGACAACGTCAGCTACCAGTACATAGGGTGTTTA 741 ||||| ||||| |||||| |||| | || ||| || ||||| | |||| Sbjct 130053 TGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTCT 130111 Query 742 GGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGAATATCTACAATACAGCTT 800 ||||| ||| ||||||||||||| ||||||||||| |||||||||| || ||| | Sbjct 130112 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGT 130171 Query 801 AATAGAAATGTTTAAGGATAGATTAATAGTG-AG--TAATAAGTACGAGCC-GCTCATGG 856 ||| || | | | || || || ||| ||| || | |||| || || || | | ||| Sbjct 130172 AATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGG 130228 Query 857 CCCCTATGC--TGAATTGTATTCATGTAATAGTTATGTCAAATTTTCTTCCGGATACGGA 914 | ||| ||||| |||||||| | |||||||| ||||| | || ||| || Sbjct 130229 ---TTTTGCTATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGA 130285 Query 915 GAAAATTAGCAAGGATAGGAT 935 ||||||| || | |||| || Sbjct 130286 GAAAATTCGCCATCATAGCAT 130306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4534368259456