Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_019499.1 Length=1350 Score E Sequences producing significant alignments: (Bits) Value seq798406 104 2e-19 >seq798406 Length=249124 Score = 104 bits (114), Expect = 2e-19 Identities = 141/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 739 AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTGCAATATAGTTTAAT 798 ||| ||| ||||||||||||||||||||||||| |||| ||||| || || | |||| Sbjct 130115 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 130174 Query 799 TGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCC 855 || | | | || || ||| | | ||| | |||| ||||| || ||| ||| | Sbjct 130175 CGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTT 130232 Query 856 GCTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGAT 915 |||| | ||| |||||||| || |||||||||||||| | ||||||| |||||| || Sbjct 130233 GCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAAT 130291 Query 916 TAGCAGTGATAG 927 | || | |||| Sbjct 130292 TCGCCATCATAG 130303 Score = 100 bits (110), Expect = 2e-18 Identities = 232/340 (68%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 584 GACCCAGATGACCGCACTATCTTCTGGGTGTATGGCCCTGATGGTGGGGAAGGAAAATCC 643 || ||||||||| | | || ||||||||| |||||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 644 ACCTTTGCCAGAGACCTGTATAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTGCA 703 | ||| |||| | ||| | || |||||| || || ||| || |||| Sbjct 128869 GAGTATGCG-GAGAAGCTTGTAGCTGAAGG--CTGGTTTTAGACTAATGGTGGTTCTGTT 128925 Query 704 GATAATGTAGCTTACCAGTACATAGGTTGTTTAGGAAAT-AATATTGTATTTGATATTCC 762 | ||| | || ||||| | | |||| ||||| ||| |||||||||||||||| Sbjct 128926 GCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCC 128984 Query 763 TCGTGATAAGAAGGATTATCTGCAATATAGTTTAATTGAAATGTTTAAGGATAGATTAAT 822 ||||||||| |||| |||||||| || | |||| | | | | || || ||| | | Sbjct 128985 TCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATTGT 129044 Query 823 --AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCCGCTAGTTAATTGTATTCATGTAGT 879 ||| | |||| || || || ||| ||| | |||| | ||| |||||||| || Sbjct 129045 GCAGT--CTGATAAATAAGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCATGTTGT 129101 Query 880 AGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAGC 919 |||||| ||||||| | |||||| || ||| |||||| Sbjct 129102 TGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAGC 129141 Score = 89.7 bits (98), Expect = 4e-15 Identities = 230/340 (68%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 584 GACCCAGATGACCGCACTATCTTCTGGGTGTATGGCCCTGATGGTGGGGAAGGAAAATCC 643 || ||||||||| | | || ||||||||| |||||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 644 ACCTTTGCCAGAGACCTGTATAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTGCA 703 | || | | || | ||| | || |||||| || || ||| || |||| Sbjct 127711 GAGTACGCAAAGAAGCT-TGTAGCTGAAGG--CTGGTTTTACACTAATGGTGGTTCTGTT 127767 Query 704 GATAATGTAGCTTACCAGTACATAGGTTGTTTAGGAAAT-AATATTGTATTTGATATTCC 762 | ||| | || ||||| | | |||| ||||| ||| |||||||||||||||| Sbjct 127768 GCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCC 127826 Query 763 TCGTGATAAGAAGGATTATCTGCAATATAGTTTAATTGAAATGTTTAAGGATAGATTAAT 822 ||||||||| |||| ||||| || || | |||| || | | | || || ||| | | Sbjct 127827 TCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATTGT 127886 Query 823 --AGTTAGTAATAAGTATGAGCC-TTTAATGGCTCCGCTAGTTAATTGTATTCATGTAGT 879 ||| | |||| ||||| || ||| ||| | |||| | ||| |||||| || Sbjct 127887 GCAGTCCG--ATAAATATGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCAT---GT 127940 Query 880 AGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAGC 919 |||| ||||||||| | ||||||| || ||| |||||| Sbjct 127941 TGTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAGC 127980 Score = 84.2 bits (92), Expect = 2e-13 Identities = 132/183 (72%), Gaps = 7/183 (4%) Strand=Plus/Plus Query 739 AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTGCAATATAGTTTAAT 798 ||| ||| ||||||||||||||||| ||||||| |||| ||||| || || | |||| Sbjct 126652 AAAGAATGTTGTATTTGATATTCCTTGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 126711 Query 799 TGAAATGTTTAAGGATAGATTAATAGT-TAGTAATAAGTATGAGCC-TTTAATGGCTCCG 856 || | | | || || || ||| || ||| | | |||| || ||| ||| | | Sbjct 126712 CGAGAAGATGAAAGACAG---AATTGTGCAGT-CTGATAATGAACCAGTTACTGGTTTTG 126767 Query 857 CTAGTTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATT 916 ||| | ||| |||||||| || |||||| ||||||| | ||||||| || ||| ||| Sbjct 126768 CTA-TGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGCCTGATTATGCGAAAATT 126826 Query 917 AGC 919 ||| Sbjct 126827 AGC 126829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4132429798784