Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_019546.1 Length=1389 Score E Sequences producing significant alignments: (Bits) Value seq798406 100 2e-18 >seq798406 Length=249124 Score = 100 bits (110), Expect = 2e-18 Identities = 174/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 691 TGGTTCTATACACGTGGTGGTTCTGCAGATAATGTTAGCTACCAGTACATAGGATGTTTA 750 ||||| || || ||||||||||| | ||| | | || ||||| | |||| Sbjct 130053 TGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTGTTCT 130111 Query 751 GGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGTTT 809 ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || || | | Sbjct 130112 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGT 130171 Query 810 AATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGG 865 ||| |||| | | || || || ||| || || | |||| || || || ||| ||| Sbjct 130172 AATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGG 130228 Query 866 CTCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 925 | | | || ||| ||||||||||| |||||||||||||| | ||||||| ||||| Sbjct 130229 TTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGA 130287 Query 926 AGATT 930 | ||| Sbjct 130288 AAATT 130292 Score = 95.1 bits (104), Expect = 1e-16 Identities = 174/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 691 TGGTTCTATACACGTGGTGGTTCTGCAGATAATGTTAGCTACCAGTACATAGGATGTTTA 750 ||||| || || ||||||||||| | ||| | | || ||||| | | |||| Sbjct 128899 TGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTCT 128957 Query 751 GGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGTTT 809 ||||| ||| ||||||||||||| ||||||||||| |||| |||||||| || | | Sbjct 128958 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGT 129017 Query 810 AATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGG 865 ||| ||| | | || || || ||| || || | |||| || || || ||| ||| Sbjct 129018 AATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTGG 129074 Query 866 CTCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 925 | | | || ||| ||||||||||| |||||| ||||||| | |||||| || || Sbjct 129075 TTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGA 129133 Query 926 AGATTAG 932 | ||||| Sbjct 129134 AAATTAG 129140 Score = 87.8 bits (96), Expect = 2e-14 Identities = 173/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Plus Query 691 TGGTTCTATACACGTGGTGGTTCTGCAGATAATGTTAGCTACCAGTACATAGGATGTTTA 750 ||||| || || ||||||||||| | ||| | | || ||||| | | |||| Sbjct 127741 TGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTCT 127799 Query 751 GGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATAGTTT 809 ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || || | | Sbjct 127800 GGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGT 127859 Query 810 AATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTACGAGCCTCTTA-TGG 865 ||| |||| | | || || || ||| || ||| |||| || || || ||| ||| Sbjct 127860 AATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTGG 127916 Query 866 CTCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGA 925 | | | || ||| ||||||||| |||| ||||||||| | ||||||| || || Sbjct 127917 TTTTGCT-ATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATGCGA 127972 Query 926 AGATTAG 932 | ||||| Sbjct 127973 AAATTAG 127979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4254895423520