Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_019547.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value seq798406 87.8 2e-14 >seq798406 Length=249124 Score = 87.8 bits (96), Expect = 2e-14 Identities = 172/247 (70%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 691 CTGGTTCTATACACGTGGTGGATCTGCTGATAATGTTAGTTATCAATATATAGGTCAATT 750 |||||| || || |||||| |||| || ||| | | ||||| ||| ||| || Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC--GTCTGTT 130109 Query 751 AGG--AAATAATATTGTATTTGAGATCCCTCGTGATAAGAAGGATTATCTACAATATAGT 808 | ||| ||| |||||||||| || ||||||||||| |||| ||||| || || | Sbjct 130110 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 130169 Query 809 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-T 864 |||| |||| | | || || || ||| || || | |||| || || || ||| | Sbjct 130170 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACT 130226 Query 865 GGCCCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGACTTTGA 924 || | | || ||| ||||||||||| |||||||||||||| | ||||| | ||| Sbjct 130227 GGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGA 130285 Query 925 GAAGATT 931 ||| ||| Sbjct 130286 GAAAATT 130292 Score = 77.0 bits (84), Expect = 3e-11 Identities = 171/249 (69%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 691 CTGGTTCTATACACGTGGTGGATCTGCTGATAATGTTAGTTATCAATATATAGGTCAATT 750 |||||| || || |||||| |||| || ||| | | ||||| ||| | ||| || Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 128955 Query 751 AGG--AAATAATATTGTATTTGAGATCCCTCGTGATAAGAAGGATTATCTACAATATAGT 808 | ||| ||| |||||||||| || ||||||||||| |||| ||||| || || | Sbjct 128956 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCT 129015 Query 809 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-T 864 |||| ||| | | || || || ||| || || | |||| || || || ||| | Sbjct 129016 GTAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACT 129072 Query 865 GGCCCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGACTTTGA 924 || | | || ||| ||||||||||| |||||| ||||||| | |||| | || Sbjct 129073 GGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGC 129131 Query 925 GAAGATTAG 933 ||| ||||| Sbjct 129132 GAAAATTAG 129140 Score = 75.2 bits (82), Expect = 1e-10 Identities = 171/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Plus Query 691 CTGGTTCTATACACGTGGTGGATCTGCTGATAATGTTAGTTATCAATATATAGGTCAATT 750 |||||| || || |||||| |||| || ||| | | ||||| ||| | ||| || Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 127797 Query 751 AGG--AAATAATATTGTATTTGAGATCCCTCGTGATAAGAAGGATTATCTACAATATAGT 808 | ||| ||| |||||||||| || ||||||||||| |||| ||||| || || | Sbjct 127798 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 127857 Query 809 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTACGAGCCTCTTA-T 864 |||| |||| | | || || || ||| || ||| |||| || || || ||| | Sbjct 127858 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACT 127914 Query 865 GGCCCCGTTAATTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCTGACTTTGA 924 || | | || ||| ||||||||| |||| ||||||||| | ||||| | || Sbjct 127915 GGTTTTGCT-ATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATGC 127970 Query 925 GAAGATTAG 933 ||| ||||| Sbjct 127971 GAAAATTAG 127979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4220353837056