Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_020502.1 Length=1364 Score E Sequences producing significant alignments: (Bits) Value seq798406 98.7 8e-18 >seq798406 Length=249124 Score = 98.7 bits (108), Expect = 8e-18 Identities = 135/183 (74%), Gaps = 12/183 (7%) Strand=Plus/Plus Query 757 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTTCAATACAGTTTAATA 816 || ||| ||||||||||||||||||||||||| |||| |||||||| ||| | |||| Sbjct 130116 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 130175 Query 817 GAGATGTTTAAAGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGG--CT 870 |||| | | ||||| || ||| || || | |||| || || || ||| ||| | Sbjct 130176 GAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGGTTTT 130232 Query 871 CCTTTAATTAAATGTATTCATGTTGTAGTTGTGTCTAATTTTCTCCCAGACTTTGAGAAG 930 || | | |||| ||||||||||| ||| |||||||||| | || || | |||||| Sbjct 130233 GCTATGAATAAA---ATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAA 130289 Query 931 ATT 933 ||| Sbjct 130290 ATT 130292 Score = 84.2 bits (92), Expect = 2e-13 Identities = 232/344 (67%), Gaps = 24/344 (7%) Strand=Plus/Plus Query 601 GACCCAGATGACCGCACTATCTTCTGGGTTTACGGACCTGATGGTGGGGAAGGAAAATCC 660 || ||||||||| | | || ||||||| | ||| ||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 661 ACCTTCGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 718 | ||| | || | |||| | |||| |||||| || || ||| || |||| Sbjct 127711 GAGTACGCAAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 127765 Query 719 CAGATAATGTAGCTTACCAGTACATAGGATGTTTAGGCAAT-AATATTGTATTTGATATT 777 | ||| | || ||||| | | |||| || || ||| |||||||||||||| Sbjct 127766 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 127824 Query 778 CCTCGTGATAAGAAGGATTATCTTCAATACAGTTTAATAGAGATGTTTAAAGATAGGTTA 837 ||||||||||| |||| |||||||| ||| | |||| |||| | | ||||| || | Sbjct 127825 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAG---A 127881 Query 838 ATAGT-TAGT--AATAAGTACGAGCCTCTTA-TGG--CTCCTTTAATTAAATGTATTCAT 891 || || ||| |||| || || || ||| ||| | || | | |||| |||||| Sbjct 127882 ATTGTGCAGTCCGATAAATATGAACCAGTTACTGGTTTTGCTATGAATAAA---ATTCAT 127938 Query 892 GTTGTAGTTGTGTCTAATTTTCTCCCAGACTTTGAGAAGATTAG 935 ||| ||| ||||||||| | || || | || ||| ||||| Sbjct 127939 GTT---GTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAG 127979 Score = 80.6 bits (88), Expect = 2e-12 Identities = 231/344 (67%), Gaps = 21/344 (6%) Strand=Plus/Plus Query 601 GACCCAGATGACCGCACTATCTTCTGGGTTTACGGACCTGATGGTGGGGAAGGAAAATCC 660 || ||||||||| | | || ||||||| | ||| ||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 661 ACCTTCGCC-AGAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 718 | || ||| | |||| | |||| |||||| || || ||| || |||| Sbjct 128869 GAGTATGCGGAGAAGCTTGTAGCTGAAGG-----CTGGTTTTAGACTAATGGTGGTTCTG 128923 Query 719 CAGATAATGTAGCTTACCAGTACATAGGATGTTTAGGCAAT-AATATTGTATTTGATATT 777 | ||| | || ||||| | | |||| || || ||| |||||||||||||| Sbjct 128924 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 128982 Query 778 CCTCGTGATAAGAAGGATTATCTTCAATACAGTTTAATAGAGATGTTTAAAGATAGGTTA 837 ||||||||||| |||| ||||| || ||| | |||| ||| | | ||||| || | Sbjct 128983 CCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAG---A 129039 Query 838 ATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGG--CTCCTTTAATTAAATGTATTCAT 891 || || || | |||| || || || ||| ||| | || | | |||| |||||| Sbjct 129040 ATTGTGCAGTCTGATAAATAAGAACCAGTTACTGGTTTTGCTATGAATAAA---ATTCAT 129096 Query 892 GTTGTAGTTGTGTCTAATTTTCTCCCAGACTTTGAGAAGATTAG 935 ||||| ||| || ||||||| | | || | || ||| ||||| Sbjct 129097 GTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAG 129140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4176391817920