Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_023443.1 Length=1365 Score E Sequences producing significant alignments: (Bits) Value seq798406 87.8 2e-14 >seq798406 Length=249124 Score = 87.8 bits (96), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 749 AATATTGTATTTGATATCCCTCGTGATAAAAAGGATTATCTACAATATAGCCTAATAGAG 808 ||| ||||||||||||| |||||||||||| |||| ||||| || || |||| ||| Sbjct 130119 AATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAG 130178 Query 809 ATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGGCTCCGTT 864 | | | || || || ||| || || | |||| || || || ||| ||| | | | Sbjct 130179 AAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGGTTTTGCT 130235 Query 865 AATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCGTCCTGATTATGATAAGATTAG 924 || ||| |||||||| || |||||||||||||| ||||||||||| || ||| | Sbjct 130236 -ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAATTCG 130294 Query 925 TCAGGATAG 933 || |||| Sbjct 130295 CCATCATAG 130303 Score = 78.8 bits (86), Expect = 8e-12 Identities = 175/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 682 CTGGTTCTATACACGTGGAGGATCTGCTGATAATGTTAGTTATCAGTATATAGGGTGTTT 741 |||||| || || ||| || |||| || ||| | | ||||||||| | | |||| Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTGTTC 128956 Query 742 AGGTGCT-AATATTGTATTTGATATCCCTCGTGATAAAAAGGATTATCTACAATATAGCC 800 || ||| ||||||||||||| |||||||||||| |||| ||||| || || Sbjct 128957 TGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTG 129016 Query 801 TAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TG 856 |||| ||| | | || || || ||| || || | |||| || || || ||| || Sbjct 129017 TAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTG 129073 Query 857 GCTCCGTTAATTAATTGTATTCATGTAGTAGTTATGTCTAATTT-TCGTCCTGATTATGA 915 | | | | || ||| |||||||| || |||||| ||||||| | || ||||||||| Sbjct 129074 GTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGT-CTGATTATGC 129131 Query 916 TAAGATTAGTCA 927 || ||||| || Sbjct 129132 GAAAATTAGCCA 129143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4179531962144