Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_024374.1 Length=1392 Score E Sequences producing significant alignments: (Bits) Value seq798406 102 7e-19 >seq798406 Length=249124 Score = 102 bits (112), Expect = 7e-19 Identities = 142/192 (74%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 741 CTGTTTAGGAAAT-AATATTGTATTTGATATTCCTCGTGATGAGAAGGATTATCTCCAAT 799 ||||| ||||| ||| ||||||||||||||||||||||| | |||| ||||| || | Sbjct 130105 CTGTTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGT 130164 Query 800 ACAGTTTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCGC 856 || | |||| |||| | | || || || ||| || || | |||| ||||| || Sbjct 130165 ACTCTGTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAG 130221 Query 857 TTA-TGGCCCCGTTAATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTTCCTGAT 915 ||| ||| | | || ||| |||||||| || |||||||||||||| | |||||| Sbjct 130222 TTACTGGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGAT 130280 Query 916 TATGATAAAATT 927 ||||| |||||| Sbjct 130281 TATGAGAAAATT 130292 Score = 89.7 bits (98), Expect = 4e-15 Identities = 150/208 (72%), Gaps = 13/208 (6%) Strand=Plus/Plus Query 727 TACCAGTATATAGGCTGTTTAGGAAAT-AATATTGTATTTGATATTCCTCGTGATGAGAA 785 || |||||| | | ||||| ||||| ||| ||||||||||||||||||||||| | | Sbjct 127780 TATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACA 127838 Query 786 GGATTATCTCCAATACAGTTTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAGT--AA 842 ||| ||||| || ||| | |||| |||| | | || || || ||| || ||| | Sbjct 127839 GGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGA 127895 Query 843 TAAGTATGAGCCGCTTA-TGGCCCCGTTAATTAATTGTATTCATGTAGTAGTTATGTCTA 901 ||| ||||| || ||| ||| | | || ||| |||||| || |||| ||||| Sbjct 127896 TAAATATGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCAT---GTTGTTACGTCTA 127951 Query 902 ATTTTCTTCCTGATTATGATAAAATTAG 929 |||| | |||||||||| |||||||| Sbjct 127952 ATTTCTTGCCTGATTATGCGAAAATTAG 127979 Score = 87.8 bits (96), Expect = 2e-14 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 727 TACCAGTATATAGGCTGTTTAGGAAAT-AATATTGTATTTGATATTCCTCGTGATGAGAA 785 || |||||| | | ||||| ||||| ||| ||||||||||||||||||||||| | | Sbjct 128938 TATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACA 128996 Query 786 GGATTATCTCCAATACAGTTTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--TAA 842 ||| ||||| || ||| | |||| ||| | | || || || ||| || || | | Sbjct 128997 GGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAG---AATTGTGCAGTCTGA 129053 Query 843 TAAGTATGAGCCGCTTA-TGGCCCCGTTAATTAATTGTATTCATGTAGTAGTTATGTCTA 901 ||| || || || ||| ||| | | || ||| |||||||| || |||||| ||| Sbjct 129054 TAAATAAGAACCAGTTACTGGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTA 129112 Query 902 ATTTTCTTCCTGATTATGATAAAATTAG 929 |||| | ||||||||| |||||||| Sbjct 129113 ATTTCTTGTCTGATTATGCGAAAATTAG 129140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4264315856192