Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_026947.1 Length=1370 Score E Sequences producing significant alignments: (Bits) Value seq798406 96.9 3e-17 >seq798406 Length=249124 Score = 96.9 bits (106), Expect = 3e-17 Identities = 187/269 (70%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 842 AATTACATGAACTCTATCAATGCTAATTTTCTCAAAGTCTGGGAGAAAATTAGACATTAC 901 || |||| || |||| | || |||||||||| | || || | ||||||||||| || Sbjct 130316 AAGTACAATAATGCTATGATGGCGAATTTTCTCATAATCAGGCAAGAAATTAGACATAAC 130257 Query 902 AACTACATGAATACAATTAATTAAGGGAGCCA-TGAGAGGCTCGTACTTATTACTAACT- 959 ||| |||||||| ||| || | | ||| | | || || || |||| | ||| Sbjct 130256 AACAACATGAATTTTATTCAT-AGCAAAACCAGTAACTGGTTCATATTTATCAG--ACTG 130200 Query 960 -ATTAATCTATCCTTAAACATTTCTATTAAACTGTATTGTAGATAATCCTTCTTATCACG 1018 | | ||| || || | | | || |||| | ||| || ||||| |||| |||||||| Sbjct 130199 CACAATTCTGTCTTTCATCTTCTCGATTACAGAGTACTGAAGATATTCCTGTTTATCACG 130140 Query 1019 AGGTATATCAAATACAATATT-ATTTCCTAAACACCCTATATACTGGTAGCTGACATTAT 1077 ||| ||||||||||||| ||| ||||| |||| | |||||| || ||| ||| Sbjct 130139 AGGAATATCAAATACAACATTGTTTTCCAGAACAGAC-GCATACTGATACATGATATTCG 130081 Query 1078 CGGCAGACCCACCACGAGTATAGAACCAG 1106 | |||| |||||| ||| || |||||| Sbjct 130080 CAACAGAACCACCATTAGTGTAAAACCAG 130052 Score = 87.8 bits (96), Expect = 2e-14 Identities = 229/340 (67%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 863 GCTAATTTTCTCAAAGTCTGGGAGAAAATTAGACATTACAACTACATGAATACAATTAAT 922 |||||||||| || | || | | ||||||| ||| ||||| |||||||| ||| || Sbjct 129141 GCTAATTTTCGCATAATCAGACAAGAAATTAGCCATAACAACAACATGAATTTTATTCAT 129082 Query 923 TAAGGGAGCCA-TGAGAGGCTCGTACTTATTACTAACT--ATTAATCTATCCTTAAACAT 979 | | ||| | | || || || |||| | ||| | | ||| || || | | | Sbjct 129081 -AGCAAAACCAGTAACTGGTTCTTATTTATCAG--ACTGCACAATTCTGTCTTTCATCTT 129025 Query 980 TTCTATTAAACTGTATTGTAGATAATCCTTCTTATCACGAGGTATATCAAATACAATATT 1039 | |||| | ||| || ||||| |||| ||||||||||| ||||||||||||| ||| Sbjct 129024 CTTGATTACAGAGTACTGCAGATATTCCTGTTTATCACGAGGAATATCAAATACAACATT 128965 Query 1040 -ATTTCCTAAACACCCTATATACTGGTAGCTGACATTATCGGCAGACCCACCACGAGTAT 1098 ||||| |||| | | |||||| || ||| ||| | |||| |||||| ||| | Sbjct 128964 GTTTTCCAGAACAGAC-ACATACTGATACATGATATTCGCAACAGAACCACCATTAGTCT 128906 Query 1099 AGAACCAGGACCCACTTCTGTAAAGGTCTCGCGCGAATGTGGATTTTCCTTCTCCACCAT 1158 | |||||| || | || || |||| ||| | | |||||||| || || | Sbjct 128905 AAAACCAG--CCTTCAGCTACAAGCTTCTC-CGCATACTCCGTCTTTCCTTCGCCTCCTT 128849 Query 1159 CTGGCCCATAAACCCAGAGGATAGTGCGGTCATCTGGGTC 1198 | || || | ||||||| || | | ||||||||| || Sbjct 128848 CAGGGCCGAACACCCAGATGACCTTTCTGTCATCTGGTTC 128809 Score = 84.2 bits (92), Expect = 2e-13 Identities = 172/248 (69%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 863 GCTAATTTTCTCAAAGTCTGGGAGAAAATTAGACATTACAACTACATGAATACAATTAAT 922 |||||||||| || | || || | ||||||||| | ||||| |||||| ||| || Sbjct 127980 GCTAATTTTCGCATAATCAGGCAAGAAATTAGACGTAACAAC---ATGAATTTTATTCAT 127924 Query 923 TAAGGGAGCCA-TGAGAGGCTCGTACTTATTACTAACT--ATTAATCTATCCTTAAACAT 979 | | ||| | | || || || |||| | ||| | | ||| || || | | | Sbjct 127923 -AGCAAAACCAGTAACTGGTTCATATTTAT--CGGACTGCACAATTCTGTCTTTCATCTT 127867 Query 980 TTCTATTAAACTGTATTGTAGATAATCCTTCTTATCACGAGGTATATCAAATACAATATT 1039 || |||| | ||| || ||||| |||| ||||||||||| ||||||||||||| ||| Sbjct 127866 CTCGATTACAGAGTACTGAAGATATTCCTGTTTATCACGAGGAATATCAAATACAACATT 127807 Query 1040 -ATTTCCTAAACACCCTATATACTGGTAGCTGACATTATCGGCAGACCCACCACGAGTAT 1098 ||||| |||| | | |||||| || ||| ||| | |||| |||||| ||| | Sbjct 127806 GTTTTCCAGAACAGAC-ACATACTGATACATGATATTCGCAACAGAACCACCATTAGTGT 127748 Query 1099 AGAACCAG 1106 | |||||| Sbjct 127747 AAAACCAG 127740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4195232683264