Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_027431.1 Length=1375 Score E Sequences producing significant alignments: (Bits) Value seq798406 100 2e-18 >seq798406 Length=249124 Score = 100 bits (110), Expect = 2e-18 Identities = 182/260 (70%), Gaps = 16/260 (6%) Strand=Plus/Plus Query 700 CTGGTTCTATACACGTGGTGGGTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 759 |||||| || || |||||| |||| || ||| | | |||||||| | ||| || Sbjct 130052 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTA--TGCGTCTGTT 130109 Query 760 AGG--AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGT 817 | ||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 130110 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 130169 Query 818 TTAATAGAGATGTTTAAGGATAGGTTAATAGTTAGCA-----ATAAGTATGAGCCTCTTA 872 |||| |||| | | || || || ||| || ||| |||| ||||| || ||| Sbjct 130170 GTAATCGAGAAGATGAAAGACAG---AATTGT--GCAGTCTGATAAATATGAACCAGTTA 130224 Query 873 -TGGCTCCGTTAATTAATTGTATTCACGTAGTTGTAATGTCTAATTTTCTCCCAGACTTT 931 ||| | | | || ||| ||||| || ||||| ||||||||||| | || || | | Sbjct 130225 CTGGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTAT 130283 Query 932 GAGAAGATTAGTCAAGATAG 951 ||||| ||| | || |||| Sbjct 130284 GAGAAAATTCGCCATCATAG 130303 Score = 86.0 bits (94), Expect = 5e-14 Identities = 175/252 (69%), Gaps = 15/252 (6%) Strand=Plus/Plus Query 700 CTGGTTCTATACACGTGGTGGGTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 759 |||||| || || |||||| |||| || ||| | | |||||||| | ||| || Sbjct 127740 CTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 127797 Query 760 AGG--AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGT 817 | ||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 127798 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 127857 Query 818 TTAATAGAGATGTTTAAGGATAGGTTAATAGT-TAG--CAATAAGTATGAGCCTCTTA-T 873 |||| |||| | | || || || ||| || || | |||| ||||| || ||| | Sbjct 127858 GTAATCGAGAAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACT 127914 Query 874 GGCTCCGTTAATTAATTGTATTCACGTAGTTGTAATGTCTAATTTTCTCCCAGACTTTGA 933 || | | | || ||| ||||| ||||| | ||||||||| | || || | || Sbjct 127915 GGTTTTGCT-ATGAATAAAATTCA---TGTTGTTACGTCTAATTTCTTGCCTGATTATGC 127970 Query 934 GAAGATTAGTCA 945 ||| ||||| || Sbjct 127971 GAAAATTAGCCA 127982 Score = 80.6 bits (88), Expect = 2e-12 Identities = 174/254 (69%), Gaps = 16/254 (6%) Strand=Plus/Plus Query 700 CTGGTTCTATACACGTGGTGGGTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 759 |||||| || || |||||| |||| || ||| | | |||||||| | ||| || Sbjct 128898 CTGGTTTTAGACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 128955 Query 760 AGG--AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGT 817 | ||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 128956 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCT 129015 Query 818 TTAATAGAGATGTTTAAGGATAGGTTAATAGTTAGCA-----ATAAGTATGAGCCTCTTA 872 |||| ||| | | || || || ||| || ||| |||| || || || ||| Sbjct 129016 GTAATCAAGAAGATGAAAGACAG---AATTGT--GCAGTCTGATAAATAAGAACCAGTTA 129070 Query 873 -TGGCTCCGTTAATTAATTGTATTCACGTAGTTGTAATGTCTAATTTTCTCCCAGACTTT 931 ||| | | | || ||| ||||| || ||||| ||| ||||||| | | || | | Sbjct 129071 CTGGTTTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTAT 129129 Query 932 GAGAAGATTAGTCA 945 | ||| ||||| || Sbjct 129130 GCGAAAATTAGCCA 129143 Score = 78.8 bits (86), Expect = 8e-12 Identities = 174/254 (69%), Gaps = 13/254 (5%) Strand=Plus/Plus Query 715 TGGTGGGTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATTAGG--AAATAATATT 772 |||||| |||| || ||| | | |||||||| | ||| || | ||| ||| || Sbjct 126604 TGGTGGTTCTGTTGCGAATATCATGTATCAGTAAGT--GTCTGTTCTGGAAAAGAATGTT 126661 Query 773 GTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATAGAGATGTTT 832 ||||||||||||||| ||||||| |||| ||||| || ||| | |||| |||| | | Sbjct 126662 GTATTTGATATTCCTTGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATG 126721 Query 833 AAGGATAGGTTAATAGTTAGCA--ATAAGTATGAGCCTCTTA-TGGCTCCGTTAATTAAT 889 || || || ||| || ||| | | |||| || ||| ||| | | | || ||| Sbjct 126722 AAAGACAG---AATTGT--GCAGTCTGATAATGAACCAGTTACTGGTTTTGCT-ATGAAT 126775 Query 890 TGTATTCACGTAGTTGTAATGTCTAATTTTCTCCCAGACTTTGAGAAGATTAGTCAAGAT 949 ||||| || ||||| ||| ||||||| | || || | || ||| ||||| || || Sbjct 126776 AAAATTCATGTTGTTGTTATGGCTAATTTCTTGCCTGATTATGCGAAAATTAGCCATCAT 126835 Query 950 AGAGTTCATGTAAT 963 | || |||||| Sbjct 126836 CGCATTATTGTAAT 126849 Score = 75.2 bits (82), Expect = 1e-10 Identities = 170/249 (68%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 700 CTGGTTCTATACACGTGGTGGGTCTGCTGATAATGTTAGTTATCAGTACATAGGTCAATT 759 |||||| || || || ||| |||| || ||| | | |||||||| | ||| || Sbjct 131205 CTGGTTTTACACTAATGTTGGTTCTGTTGCGAATATCATGTATCAGTATGT--GTCTGTT 131262 Query 760 AGG--AAATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGT 817 | ||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| | Sbjct 131263 CTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCT 131322 Query 818 TTAATAGAGATGTTTAAGGATAGGTTAATAGTTAGCAATAAGTATGAGCCTCTTA-TGGC 876 |||| |||| | | || | | | ||| | |||| ||||| || ||| ||| Sbjct 131323 GTAATCGAGAAGATGAA--AAAATTGTGCAGTCTG--ATAAATATGAACCAGTTACTGGT 131378 Query 877 TCCGTTAATTAATTGTATTCACGTAGTTGTAATGTCTAATTTTCTCCCAGACTTTGAGAA 936 | | | || ||| ||||| || ||||| ||| | ||||| | || || | || ||| Sbjct 131379 TTTGCT-ATGAATAAAATTCATGTTGTTGTTATGGCCAATTTCTTGCCTGATTATGCGAA 131437 Query 937 GATTAGTCA 945 ||||| || Sbjct 131438 AATTAGCCA 131446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4210933404384