Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_028115.1 Length=1387 Score E Sequences producing significant alignments: (Bits) Value seq798406 84.2 2e-13 >seq798406 Length=249124 Score = 84.2 bits (92), Expect = 2e-13 Identities = 231/344 (67%), Gaps = 19/344 (6%) Strand=Plus/Plus Query 599 GACCCAGATGACCGCACTATCTTCTGGGTATACGGACCTGATGGTGGGGAAGGAAAATCC 658 || ||||||||| | | || ||||||| | ||| |||| || || | |||||| | Sbjct 129963 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCTCTGAAGGAGGCGGAGGAAAGACG 130022 Query 659 ACCTTCGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 716 | ||| | || | |||| | |||| |||||| || || ||| || |||| Sbjct 130023 GAGTACGCGAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 130077 Query 717 CTGATAATGTTAGCTACCAGTATATAGGTTGTTTAGGAAAT-AATATTGTATTCGATATC 775 || ||| | | || |||||| | |||| ||||| ||| ||||||| ||||| Sbjct 130078 TTGCGAATATCATGTATCAGTATGC-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 130136 Query 776 CCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATAGAGATGTTTAAGGATAGATTA 835 ||||||||||| |||| ||||| || ||| | |||| |||| | | || || ||| | Sbjct 130137 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATT 130196 Query 836 AT--AGTTAGTAATAAGTACGAGCCTCTTA-TGG--CTCCCTTAATTAAATGTATTCATG 890 | ||| | |||| || || || ||| ||| | | | | |||| ||||||| Sbjct 130197 GTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTTGCTATGAATAAA---ATTCATG 130251 Query 891 TAGTTGTAATGTCTAATTTTCTCCCAAACTTCGAGAAAATTAGC 934 | ||||| ||||||||||| | || | | ||||||||| || Sbjct 130252 TTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAATTCGC 130295 Score = 80.6 bits (88), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 599 GACCCAGATGACCGCACTATCTTCTGGGTATACGGACCTGATGGTGGGGAAGGAAAATCC 658 || ||||||||| | | || ||||||| | ||| ||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 659 ACCTTCGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 716 | ||| | || | |||| | |||| |||||| || || ||| || |||| Sbjct 127711 GAGTACGCAAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 127765 Query 717 CTGATAATGTTAGCTACCAGTATATAGGTTGTTTAGGAAAT-AATATTGTATTCGATATC 775 || ||| | | || |||||| | | |||| ||||| ||| ||||||| ||||| Sbjct 127766 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 127824 Query 776 CCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATAGAGATGTTTAAGGATAGA 832 ||||||||||| |||| ||||| || ||| | |||| |||| | | || || ||| Sbjct 127825 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGA 127881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4248615135072