Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_028116.1 Length=1381 Score E Sequences producing significant alignments: (Bits) Value seq798406 98.7 8e-18 >seq798406 Length=249124 Score = 98.7 bits (108), Expect = 8e-18 Identities = 233/342 (68%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 602 GACCCAGATGACCGCACTATCTTCTGGGTATACGGACCTGATGGTGGGGAAGGAAAATCC 661 || ||||||||| | | || ||||||| | ||| |||| || || | |||||| | Sbjct 129963 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCTCTGAAGGAGGCGGAGGAAAGACG 130022 Query 662 ACCTTCGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 719 | ||| | || | |||| | |||| |||||| || || ||| || |||| Sbjct 130023 GAGTACGCGAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 130077 Query 720 CTGATAATGTTAGCTACCAGTATATAGGGTGTTTAGGAAAT-AATATTGTATTTGATATC 778 || ||| | | || |||||| | |||| ||||| ||| ||||||||||||| Sbjct 130078 TTGCGAATATCATGTATCAGTATGC-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 130136 Query 779 CCTCGTGATAAGAAGGATTATCTACAATATAGTTTAATTGAGATGTTTAAGGATAGATTA 838 ||||||||||| |||| ||||| || || | |||| |||| | | || || ||| | Sbjct 130137 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATT 130196 Query 839 GT--AGTTAGTAATAAGTATGAGCCCCTTA-TGGCTCCTCTACTTAATTGTATTCATGTA 895 || ||| | |||| ||||| || ||| ||| | ||| | ||| |||||||| Sbjct 130197 GTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCATGTT 130253 Query 896 GTAGTTATGTCTAATTTTCTCCCAAACTTTGAGAAGATTAGC 937 || |||||||||||||| | || | | |||||| ||| || Sbjct 130254 GTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAATTCGC 130295 Score = 93.3 bits (102), Expect = 4e-16 Identities = 232/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 602 GACCCAGATGACCGCACTATCTTCTGGGTATACGGACCTGATGGTGGGGAAGGAAAATCC 661 || ||||||||| | | || ||||||| | ||| ||||| || || ||||||| | Sbjct 127651 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCCAAGGAAAGACG 127710 Query 662 ACCTTCGCCA-GAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 719 | ||| | || | |||| | |||| |||||| || || ||| || |||| Sbjct 127711 GAGTACGCAAAGAAGCTTGTAGCTGAAGG-----CTGGTTTTACACTAATGGTGGTTCTG 127765 Query 720 CTGATAATGTTAGCTACCAGTATATAGGGTGTTTAGGAAAT-AATATTGTATTTGATATC 778 || ||| | | || |||||| | | |||| ||||| ||| ||||||||||||| Sbjct 127766 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 127824 Query 779 CCTCGTGATAAGAAGGATTATCTACAATATAGTTTAATTGAGATGTTTAAGGATAGATTA 838 ||||||||||| |||| ||||| || || | |||| |||| | | || || ||| | Sbjct 127825 CCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAGAAGATGAAAGACAGAATT 127884 Query 839 GT--AGTTAGTAATAAGTATGAGCCCCTTA-TGGCTCCTCTACTTAATTGTATTCATGTA 895 || ||| | |||| ||||| || ||| ||| | ||| | ||| |||||| Sbjct 127885 GTGCAGTCCG--ATAAATATGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCAT--- 127938 Query 896 GTAGTTATGTCTAATTTTCTCCCAAACTTTGAGAAGATTAGC 937 || |||| ||||||||| | || | | || ||| |||||| Sbjct 127939 GTTGTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAGC 127980 Score = 89.7 bits (98), Expect = 4e-15 Identities = 216/317 (68%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 602 GACCCAGATGACCGCACTATCTTCTGGGTATACGGACCTGATGGTGGGGAAGGAAAATCC 661 || ||||||||| | | || ||||||| | ||| ||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 662 ACCTTCGCC-AGAGACCTGTA-CAGAAGTGGGTCCTGGTTCTATACACGTGGAGGATCTG 719 | || ||| | |||| | |||| |||||| || || ||| || |||| Sbjct 128869 GAGTATGCGGAGAAGCTTGTAGCTGAAGG-----CTGGTTTTAGACTAATGGTGGTTCTG 128923 Query 720 CTGATAATGTTAGCTACCAGTATATAGGGTGTTTAGGAAAT-AATATTGTATTTGATATC 778 || ||| | | || |||||| | | |||| ||||| ||| ||||||||||||| Sbjct 128924 TTGCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATT 128982 Query 779 CCTCGTGATAAGAAGGATTATCTACAATATAGTTTAATTGAGATGTTTAAGGATAGATTA 838 ||||||||||| |||| ||||| || || | |||| ||| | | || || ||| | Sbjct 128983 CCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATT 129042 Query 839 GT--AGTTAGTAATAAGTATGAGCCCCTTA-TGGCTCCTCTACTTAATTGTATTCATGTA 895 || ||| | |||| || || || ||| ||| | ||| | ||| |||||||| Sbjct 129043 GTGCAGT--CTGATAAATAAGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCATGTT 129099 Query 896 GTAGTTATGTCTAATTT 912 || |||||| ||||||| Sbjct 129100 GTTGTTATGGCTAATTT 129116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4229774269728