Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_030226.1 Length=1386 Score E Sequences producing significant alignments: (Bits) Value seq798406 91.5 1e-15 >seq798406 Length=249124 Score = 91.5 bits (100), Expect = 1e-15 Identities = 230/340 (68%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 613 GACCCAGATGACCGCACTATCTTCTGGGTTTATGGCCCTACTGGTGGGGAAGGAAAATCC 672 || ||||||||| | | || ||||||| | |||||| || || |||||||| | Sbjct 128809 GAACCAGATGACAGAAAGGTCATCTGGGTGTTCGGCCCTGAAGGAGGCGAAGGAAAGACG 128868 Query 673 ACCTTTGCCAGAGATCTGTATAGATCAGGAGGCTGGTTCTATACACGTGGAGGATCTGCA 732 | ||| |||| | ||| | | ||||||||| || || ||| || |||| Sbjct 128869 GAGTATGCG-GAGAAGCTTGTAGCTGA--AGGCTGGTTTTAGACTAATGGTGGTTCTGTT 128925 Query 733 GATAATGTAGCTTACCAGTATATAGGTTGTTTAGGAAAT-AATATTGTATTTGATATCCC 791 | ||| | || |||||| | | |||| ||||| ||| ||||||||||||| || Sbjct 128926 GCGAATATCATGTATCAGTATGT-GTCTGTTCTGGAAAACAATGTTGTATTTGATATTCC 128984 Query 792 TCGTGATAAGAAGGATTATCTGCAATATAGTTTAATTGAAATGTTTAAGGATAGATTAAT 851 ||||||||| |||| |||||||| || | |||| | | | | || || ||| | | Sbjct 128985 TCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAGAAGATGAAAGACAGAATTGT 129044 Query 852 --AGTTAGTAATAAGTACGAGCC-GTTGATGGCTCCTCTAGTTAATTGTATTCATGTTGT 908 ||| | |||| || || || ||| ||| | ||| | ||| ||||||||||| Sbjct 129045 GCAGT--CTGATAAATAAGAACCAGTTACTGGTTTTGCTA-TGAATAAAATTCATGTTGT 129101 Query 909 AGTTATGTCTAATTTTCTTCCGGATTTTGAGAAGATTAGC 948 |||||| ||||||| | | |||| || ||| |||||| Sbjct 129102 TGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAGC 129141 Score = 91.5 bits (100), Expect = 1e-15 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 702 AGGCTGGTTCTATACACGTGGAGGATCTGCAGATAATGTAGCTTACCAGTATATAGGTTG 761 ||||||||| || || ||| || |||| | ||| | || |||||| | || Sbjct 130049 AGGCTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGC-GTCTG 130107 Query 762 TTTAGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATA 820 || ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || || Sbjct 130108 TTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACT 130167 Query 821 GTTTAATTGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTACGAGCC-GTTGA 877 | |||| || | | | || || ||| | | ||| | |||| || || || ||| Sbjct 130168 CTGTAATCGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTAC 130225 Query 878 TGGCTCCTCTAGTTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCGGATTTTG 937 ||| | ||| | ||| ||||||||||| |||||||||||||| | || |||| || Sbjct 130226 TGGTTTTGCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATG 130284 Query 938 AGAAGATTAGCAGTGATAG 956 |||| ||| || | |||| Sbjct 130285 AGAAAATTCGCCATCATAG 130303 Score = 80.6 bits (88), Expect = 2e-12 Identities = 173/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 702 AGGCTGGTTCTATACACGTGGAGGATCTGCAGATAATGTAGCTTACCAGTATATAGGTTG 761 ||||||||| || || ||| || |||| | ||| | || |||||| | | || Sbjct 127737 AGGCTGGTTTTACACTAATGGTGGTTCTGTTGCGAATATCATGTATCAGTATGT-GTCTG 127795 Query 762 TTTAGGAAAT-AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTGCAATATA 820 || ||||| ||| ||||||||||||| ||||||||||| |||| ||||| || || Sbjct 127796 TTCTGGAAAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACT 127855 Query 821 GTTTAATTGAAATGTTTAAGGATAGATTAAT--AGTTAGTAATAAGTACGAGCC-GTTGA 877 | |||| || | | | || || ||| | | ||| | |||| || || || ||| Sbjct 127856 CTGTAATCGAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTAC 127913 Query 878 TGGCTCCTCTAGTTAATTGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCGGATTTTG 937 ||| | ||| | ||| ||||||||| |||| ||||||||| | || |||| || Sbjct 127914 TGGTTTTGCTA-TGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATG 127969 Query 938 AGAAGATTAGC 948 ||| |||||| Sbjct 127970 CGAAAATTAGC 127980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4245474990848