Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1282417 96.9 5e-15 >seq1282417 Length=474670 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 163730 GAAGACCTAGCAGAAGCCTGTGC-GTTCTTTATGGATAACTACAGTGACTACGGTCACGT 163788 || || |||||||| || ||| |||| | |||||||| |||||||| | || || Sbjct 361424 GATGATCTAGCAGATGCA-GTGATGTTCCTGATGGATAAATACAGTGATTTTCCCCATGT 361366 Query 163789 CAATGTTGGAACTGGTGAAGACATCACCATCAAACACCTAGCAGAGAGTATTGCAAAG-- 163846 |||||| |||| ||| | || | || |||||| |||| |||||| | | ||| | Sbjct 361365 CAATGTGGGAAGTGGGAATGAAGTGACGATCAAAAACCTTGCAGAGCTTGT--CAAGGAA 361308 Query 163847 GTTATTGGTTTTGAAGGAGAGATCCTATGGGACACTTCAAAACCAAATGGAAATCCTCGC 163906 || | || |||||||||||| || |||||| || | |||||| |||||| ||||| Sbjct 361307 GTGGTGGGATTTGAAGGAGAGCTCAAGTGGGACCCTACCAAACCAGATGGAACCCCTCGA 361248 Query 163907 AAATTACTTGACAGC 163921 ||| || | |||||| Sbjct 361247 AAACTAATGGACAGC 361233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676243087136640