Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_033271.1 Length=1370 Score E Sequences producing significant alignments: (Bits) Value seq798406 80.6 2e-12 >seq798406 Length=249124 Score = 80.6 bits (88), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 754 AAATAATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATTTACAATATAGTTTAAT 813 ||| ||| ||||||||||||| ||||||||||| |||| ||| | || || | |||| Sbjct 130115 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 130174 Query 814 TGAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCGCTTA-TGGCCCC 870 |||| | | || || ||| | || ||| | |||| ||||| || ||| ||| Sbjct 130175 CGAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGGTTTT 130232 Query 871 TCTACTTAAGTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGACTTCGAGAAGAT 930 ||| | || ||||||||||| |||||||||||||| | || || | ||||| || Sbjct 130233 GCTA-TGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAAT 130291 Query 931 TAGC 934 | || Sbjct 130292 TCGC 130295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4195232683264