Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_033274.1 Length=1369 Score E Sequences producing significant alignments: (Bits) Value seq798406 98.7 8e-18 >seq798406 Length=249124 Score = 98.7 bits (108), Expect = 8e-18 Identities = 134/182 (74%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 751 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATA 810 || ||| ||||||||||||||||||||||||| |||| ||||| || ||| | |||| Sbjct 130116 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 130175 Query 811 GAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCCCCT 867 |||| | | || || ||| | || ||| | |||| ||||| || | | ||| | Sbjct 130176 GAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATATGAACCAGTTACTGG---TT 130230 Query 868 TTGC--TTAAGTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGATTTTGAGAAGA 925 |||| | || ||||||||||| |||||||||||||| | || |||| |||||| | Sbjct 130231 TTGCTATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAA 130290 Query 926 TT 927 || Sbjct 130291 TT 130292 Score = 82.4 bits (90), Expect = 6e-13 Identities = 132/184 (72%), Gaps = 13/184 (7%) Strand=Plus/Plus Query 751 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATA 810 || ||| ||||||||||||||||||||||||| |||| ||||| || ||| | |||| Sbjct 127804 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATC 127863 Query 811 GAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCCCCT 867 |||| | | || || ||| | || ||| | |||| ||||| || | | ||| | Sbjct 127864 GAGAAGATGAAAGACAGAATTGTGCAGTCCG--ATAAATATGAACCAGTTACTGG---TT 127918 Query 868 TTGC--TTAAGTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGATTTTGAGAAGA 925 |||| | || ||||||||| |||| ||||||||| | || |||| || ||| | Sbjct 127919 TTGCTATGAATAAAATTCATGTT---GTTACGTCTAATTTCTTGCCTGATTATGCGAAAA 127975 Query 926 TTAG 929 |||| Sbjct 127976 TTAG 127979 Score = 80.6 bits (88), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 751 AATAATATTGTATTTGATATTCCTCGTGATAAGAAGGATTATCTACAATACAGTTTAATA 810 || ||| ||||||||||||||||||||||||| |||| ||||| || ||| | |||| Sbjct 128962 AACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATC 129021 Query 811 GAGATGTTTAAGGATAGATTAGT--AGTTAGTAATAAGTATGAGCCTCTGA-TGGCCCCT 867 ||| | | || || ||| | || ||| | |||| || || || | | ||| | Sbjct 129022 AAGAAGATGAAAGACAGAATTGTGCAGT--CTGATAAATAAGAACCAGTTACTGG---TT 129076 Query 868 TTGC--TTAAGTGTATTCATGTTGTAGTTATGTCTAATTTTCTCCCAGATTTTGAGAAGA 925 |||| | || ||||||||||| |||||| ||||||| | | |||| || ||| | Sbjct 129077 TTGCTATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAA 129136 Query 926 TTAG 929 |||| Sbjct 129137 TTAG 129140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4192092539040