Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_033335.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value seq798406 82.4 6e-13 >seq798406 Length=249124 Score = 82.4 bits (90), Expect = 6e-13 Identities = 132/184 (72%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 753 AAATAATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAATATAGTTTAAT 812 ||| ||| ||||||||||||| ||||||||||| |||| ||||| || || | |||| Sbjct 130115 AAACAATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAAT 130174 Query 813 TGAAATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTACGAGCCTCTTA-TGG--C 866 || | | | || || || ||| || || | |||| || || || ||| ||| Sbjct 130175 CGAGAAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGGTTT 130231 Query 867 TCCTTTAATTAAATGTATTCATGTTGTAGTTATGTCTAATTTTCTTCCAGACTTTGAGAA 926 | || | | |||| ||||||||||| |||||||||||||| | || || | |||||| Sbjct 130232 TGCTATGAATAAA---ATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAA 130288 Query 927 GATT 930 ||| Sbjct 130289 AATT 130292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4009964174048