Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_033555.1 Length=1364 Score E Sequences producing significant alignments: (Bits) Value seq798406 95.1 1e-16 >seq798406 Length=249124 Score = 95.1 bits (104), Expect = 1e-16 Identities = 131/178 (74%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 751 AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGCTTAATTGAG 810 ||| ||||||||||||| ||||||||||| |||| ||||| ||||| |||| ||| Sbjct 130119 AATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAG 130178 Query 811 ATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTTA-TGGCTCCGTT 866 | | | || || || ||| || || | |||| ||||| || ||| ||| | | | Sbjct 130179 AAGATGAAAGACAG---AATTGTGCAGTCTGATAAATATGAACCAGTTACTGGTTTTGCT 130235 Query 867 AATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATT 924 || ||| |||||||| || |||||||||||||| | ||||||| |||||| ||| Sbjct 130236 -ATGAATAAAATTCATGTTGTTGTTATGTCTAATTTCTTGCCTGATTATGAGAAAATT 130292 Score = 78.8 bits (86), Expect = 8e-12 Identities = 129/180 (72%), Gaps = 11/180 (6%) Strand=Plus/Plus Query 751 AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGCTTAATTGAG 810 ||| ||||||||||||| ||||||||||| |||| ||||| ||||| |||| ||| Sbjct 127807 AATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAG 127866 Query 811 ATGTTTAAGGATAGGTTAATAGT-TAGT--AATAAGTATGAGCCTCTTA-TGGCTCCGTT 866 | | | || || || ||| || ||| |||| ||||| || ||| ||| | | | Sbjct 127867 AAGATGAAAGACAG---AATTGTGCAGTCCGATAAATATGAACCAGTTACTGGTTTTGCT 127923 Query 867 AATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAG 926 || ||| |||||| || |||| ||||||||| | ||||||| || ||| ||||| Sbjct 127924 -ATGAATAAAATTCAT---GTTGTTACGTCTAATTTCTTGCCTGATTATGCGAAAATTAG 127979 Score = 75.2 bits (82), Expect = 9e-11 Identities = 127/178 (71%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 751 AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGCTTAATTGAG 810 ||| ||||||||||||| ||| ||||||| |||| ||||| ||||| |||| ||| Sbjct 126656 AATGTTGTATTTGATATTCCTTGTGATAAACAGGAATATCTTCAGTACTCTGTAATCGAG 126715 Query 811 ATGTTTAAGGATAGGTTAATAGT-TAGTAATAAGTATGAGCCTCTTA-TGGCTCCGTTAA 868 | | | || || || ||| || ||| | | |||| || ||| ||| | | | | Sbjct 126716 AAGATGAAAGACAG---AATTGTGCAGT-CTGATAATGAACCAGTTACTGGTTTTGCT-A 126770 Query 869 TTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAG 926 | ||| |||||||| || |||||| ||||||| | ||||||| || ||| ||||| Sbjct 126771 TGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGCCTGATTATGCGAAAATTAG 126828 Score = 75.2 bits (82), Expect = 9e-11 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 751 AATATTGTATTTGATATCCCTCGTGATAAGAAGGATTATCTACAGTATAGCTTAATTGAG 810 ||| ||||||||||||| ||||||||||| |||| ||||| ||||| |||| || Sbjct 128965 AATGTTGTATTTGATATTCCTCGTGATAAACAGGAATATCTGCAGTACTCTGTAATCAAG 129024 Query 811 ATGTTTAAGGATAGGTTAATAGT-TAG--TAATAAGTATGAGCCTCTTA-TGGCTCCGTT 866 | | | || || || ||| || || | |||| || || || ||| ||| | | | Sbjct 129025 AAGATGAAAGACAG---AATTGTGCAGTCTGATAAATAAGAACCAGTTACTGGTTTTGCT 129081 Query 867 AATTAATTGTATTCATGTAGTAGTTATGTCTAATTTTCTCCCTGATTTTGAGAAGATTAG 926 || ||| |||||||| || |||||| ||||||| | |||||| || ||| ||||| Sbjct 129082 -ATGAATAAAATTCATGTTGTTGTTATGGCTAATTTCTTGTCTGATTATGCGAAAATTAG 129140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4176391817920