Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq570966 334 1e-89
seq107738 98.7 2e-18
seq357911 95.1 2e-17
seq1236645 78.8 2e-12
seq1236634 78.8 2e-12
seq578747 75.2 2e-11
seq514015 75.2 2e-11
>seq570966
Length=1489
Score = 334 bits (370), Expect = 1e-89
Identities = 269/322 (84%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 15 gggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74
|||||||||||| |||||| ||| |||||||||||||||||||| || ||||
Sbjct 838 GGGTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCACCTATATGGTGTGA 779
Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTT 134
|||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||
Sbjct 778 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAATTTT-ACTAGCGAGGTTAAGGACTT 720
Query 135 CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGA 194
|||| ||| ||||| || ||||||||| || || |||||| |||| || | ||||
Sbjct 719 CAGGTCCGG-AGCCGGAGCGAAAGCGAGTCTGAATAGGGCGCATAGTTAGTAGGATTAGA 661
Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254
||||||||||||||||||||||| | ||||||||||| |||||| | |||||||
Sbjct 660 CGCGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTCTGGTAACACAGAGTGGAGGA 601
Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314
|||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 600 CCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAAT 541
Query 315 CAAACTGGGAAATAGCTCGTAC 336
|||||||||| |||||||||||
Sbjct 540 CAAACTGGGAGATAGCTCGTAC 519
>seq107738
Length=15494
Score = 98.7 bits (108), Expect = 2e-18
Identities = 211/309 (68%), Gaps = 6/309 (2%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGAT-TCG 70
|||| |||||||||| | |||| ||| || ||||| || |||| | | || ||
Sbjct 12596 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAAAATTATATCT 12655
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||| |||||||| ||| | |||||| | | | ||| | | || || ||||||||
Sbjct 12656 ATGACCGCGTGCCTGTTGAAGAATGAGTCGGCAACTTA-TAGGCAGTGGCTTGGTTAAGG 12714
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| || | ||| ||||| || || |||||| ||| | |||| | || ||
Sbjct 12715 GAATCCG--CCGG-AGCCGTAGCGAGAGCGAGTCTTCATGGGGCAATT-GTCACTGCTTA 12770
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
| ||| |||| | |||||||| |||||| |||| ||||| ||| | | |||
Sbjct 12771 TGGACCCGAACCTGGGTGATCTATCCACGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 12830
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| |||||||| | |||||||| | ||||||| ||| || ||||||||||| ||
Sbjct 12831 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTCGTGGTTAGGGGTGAAATGC 12890
Query 311 CAATCAAAC 319
|| || |||
Sbjct 12891 CACTCGAAC 12899
>seq357911
Length=8435
Score = 95.1 bits (104), Expect = 2e-17
Identities = 210/309 (68%), Gaps = 6/309 (2%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGAT-TCG 70
|||| |||||||||| | |||| ||| || ||||| || |||| | | || ||
Sbjct 5593 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAAAATTATATCT 5652
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||| |||||||| ||| | |||||||| | | ||| | | || || ||||||||
Sbjct 5653 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCAACTTA-TAGGCAGTGGCTTGGTTAAGG 5711
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| || ||| ||||| || || |||||| ||| | |||| | || ||
Sbjct 5712 GAATCCA--CCGG-AGCCGTAGCGAGAGCGAGTCTTCATGGGGCAATT-GTCACTGCTTA 5767
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
| ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||
Sbjct 5768 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 5827
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| |||||||| | |||||||| | ||||||| ||| || ||||||||||| ||
Sbjct 5828 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTCGTGGTTAGGGGTGAAATGC 5887
Query 311 CAATCAAAC 319
|| || |||
Sbjct 5888 CACTCGAAC 5896
>seq1236645
Length=519
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| | ||||| ||| ||||||||||||| || |||| | ||||
Sbjct 410 GACCCGAAACCGAGAAATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 351
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 350 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 291
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 290 AACCAAGATCGGATATAGCTGGT 268
>seq1236634
Length=300
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 91 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 150
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 151 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 210
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 211 AACCAAGATCGGATATAGCTGGT 233
>seq578747
Length=469232
Score = 75.2 bits (82), Expect = 2e-11
Identities = 90/121 (74%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 215 CCACGAGCAGGTTGAAG-TCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGA 273
||| ||||||||||||| | || |||| | |||||||||||||| | | || |
Sbjct 433218 CCATGAGCAGGTTGAAGATAGCTCTAACAGGACTTGGAGGACCGAACCCATGTATGTGGC 433159
Query 274 AAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCG 333
||| | | |||||||| | || ||||||||||||||||| ||| | || |||||| |
Sbjct 433158 AAAATGTGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCAGATATAGCTAG 433099
Query 334 T 334
|
Sbjct 433098 T 433098
>seq514015
Length=867761
Score = 75.2 bits (82), Expect = 2e-11
Identities = 103/143 (72%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || ||| | ||||
Sbjct 861689 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAATAGGCCTTGGA 861630
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 861629 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 861570
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 861569 AACCAAGATCGGATATAGCTGGT 861547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 960769722880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |