Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq570966 334 1e-89 seq107738 98.7 2e-18 seq357911 95.1 2e-17 seq1236645 78.8 2e-12 seq1236634 78.8 2e-12 seq578747 75.2 2e-11 seq514015 75.2 2e-11 >seq570966 Length=1489 Score = 334 bits (370), Expect = 1e-89 Identities = 269/322 (84%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 15 gggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74 |||||||||||| |||||| ||| |||||||||||||||||||| || |||| Sbjct 838 GGGTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCACCTATATGGTGTGA 779 Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTT 134 |||||||||||||||||||||||||||||||||| | | || ||||||||||||| ||| Sbjct 778 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAATTTT-ACTAGCGAGGTTAAGGACTT 720 Query 135 CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGA 194 |||| ||| ||||| || ||||||||| || || |||||| |||| || | |||| Sbjct 719 CAGGTCCGG-AGCCGGAGCGAAAGCGAGTCTGAATAGGGCGCATAGTTAGTAGGATTAGA 661 Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254 ||||||||||||||||||||||| | ||||||||||| |||||| | ||||||| Sbjct 660 CGCGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTCTGGTAACACAGAGTGGAGGA 601 Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314 |||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||| Sbjct 600 CCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAAT 541 Query 315 CAAACTGGGAAATAGCTCGTAC 336 |||||||||| ||||||||||| Sbjct 540 CAAACTGGGAGATAGCTCGTAC 519 >seq107738 Length=15494 Score = 98.7 bits (108), Expect = 2e-18 Identities = 211/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGAT-TCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| | | || || Sbjct 12596 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAAAATTATATCT 12655 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||| | | | ||| | | || || |||||||| Sbjct 12656 ATGACCGCGTGCCTGTTGAAGAATGAGTCGGCAACTTA-TAGGCAGTGGCTTGGTTAAGG 12714 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | || | ||| ||||| || || |||||| ||| | |||| | || || Sbjct 12715 GAATCCG--CCGG-AGCCGTAGCGAGAGCGAGTCTTCATGGGGCAATT-GTCACTGCTTA 12770 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| |||||| |||| ||||| ||| | | ||| Sbjct 12771 TGGACCCGAACCTGGGTGATCTATCCACGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 12830 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||||| | ||||||| ||| || ||||||||||| || Sbjct 12831 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTCGTGGTTAGGGGTGAAATGC 12890 Query 311 CAATCAAAC 319 || || ||| Sbjct 12891 CACTCGAAC 12899 >seq357911 Length=8435 Score = 95.1 bits (104), Expect = 2e-17 Identities = 210/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGAT-TCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| | | || || Sbjct 5593 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAAAATTATATCT 5652 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| | | ||| | | || || |||||||| Sbjct 5653 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCAACTTA-TAGGCAGTGGCTTGGTTAAGG 5711 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | || ||| ||||| || || |||||| ||| | |||| | || || Sbjct 5712 GAATCCA--CCGG-AGCCGTAGCGAGAGCGAGTCTTCATGGGGCAATT-GTCACTGCTTA 5767 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 5768 TGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 5827 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||||| | ||||||| ||| || ||||||||||| || Sbjct 5828 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTCGTGGTTAGGGGTGAAATGC 5887 Query 311 CAATCAAAC 319 || || ||| Sbjct 5888 CACTCGAAC 5896 >seq1236645 Length=519 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| | ||||| ||| ||||||||||||| || |||| | |||| Sbjct 410 GACCCGAAACCGAGAAATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 351 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 350 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 291 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 290 AACCAAGATCGGATATAGCTGGT 268 >seq1236634 Length=300 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 91 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 150 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 151 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 210 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 211 AACCAAGATCGGATATAGCTGGT 233 >seq578747 Length=469232 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/121 (74%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 215 CCACGAGCAGGTTGAAG-TCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGA 273 ||| ||||||||||||| | || |||| | |||||||||||||| | | || | Sbjct 433218 CCATGAGCAGGTTGAAGATAGCTCTAACAGGACTTGGAGGACCGAACCCATGTATGTGGC 433159 Query 274 AAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCG 333 ||| | | |||||||| | || ||||||||||||||||| ||| | || |||||| | Sbjct 433158 AAAATGTGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCAGATATAGCTAG 433099 Query 334 T 334 | Sbjct 433098 T 433098 >seq514015 Length=867761 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || ||| | |||| Sbjct 861689 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAATAGGCCTTGGA 861630 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 861629 GGACCGAACCCACGTATGTGGCAAAATGCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 861570 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 861569 AACCAAGATCGGATATAGCTGGT 861547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 960769722880