Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq570966 176 4e-42
seq479046 93.3 4e-17
seq789720 84.2 2e-14
>seq570966
Length=1489
Score = 176 bits (194), Expect = 4e-42
Identities = 143/173 (83%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| ||||||||||||| || ||||||| |||||||||| |||||||||||||||| ||||
Sbjct 1287 GGCGGATGCCTAGGCTTTCAGAGGCGACGAAGGACGTGGTAAGCTGCGAAAAGCTGCGGG 1228
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127
|||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| |||
Sbjct 1227 GATTGGCACACACGAATTGATCCGCAGATGTCCGAATGGGGCAACCCGGCATGTTGAAGA 1168
Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| ||| || | | | || ||| || |||||||||||||||||||
Sbjct 1167 CATGTCACCCAGCAATGGG---AGCAAACCCGGAGAACTGAAACATCTAAGTA 1118
>seq479046
Length=420
Score = 93.3 bits (102), Expect = 4e-17
Identities = 132/182 (73%), Gaps = 9/182 (5%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| || |||||| |||||||| | || ||||||||||| |||
Sbjct 210 GGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAAAGCGGAGGG 151
Query 68 GAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126
|| ||||| | | ||||||| ||||||||||||||| ||||| || |||
Sbjct 150 GAGCTGGCAAACGAGCTTTGATCCTCCGATATCCGAATGGGGAAACCCACCTCTTTTGAG 91
Query 127 ATAT----ATCATAACGC-TAGG---CGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178
||| | | || | |||| ||| | ||||||| || |||||||||||||||||
Sbjct 90 GTATCCGTAACTGAATACATAGGTTACGTGAAGCGAACGCGGTGAACTGAAACATCTAAG 31
Query 179 TA 180
||
Sbjct 30 TA 29
>seq789720
Length=205
Score = 84.2 bits (92), Expect = 2e-14
Identities = 125/175 (71%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65
||||||||| ||||||| | | ||| ||| ||||| |||| ||||| ||||| ||| ||
Sbjct 18 ACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTGGTAAGCGACGAAATGCTTCG 77
Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125
|||| | | | || | || ||||||||||| |||||| || |||| | | ||
Sbjct 78 GGGAGTTGAAAATGAGCATAGATCCGTAGATTCCCGAATAGGTTAACCTTTTTAACTGCT 137
Query 126 GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
| | ||| | | |||| || | ||| ||| |||||||||||||| ||||
Sbjct 138 GCTGAATC-CATGGGCAGGCAAGAGAC-AACCTGGCGAACTGAAACATCTTAGTA 190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471087844365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |