Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq570966 176 4e-42 seq479046 93.3 4e-17 seq789720 84.2 2e-14 >seq570966 Length=1489 Score = 176 bits (194), Expect = 4e-42 Identities = 143/173 (83%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||||| || ||||||| |||||||||| |||||||||||||||| |||| Sbjct 1287 GGCGGATGCCTAGGCTTTCAGAGGCGACGAAGGACGTGGTAAGCTGCGAAAAGCTGCGGG 1228 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| ||| Sbjct 1227 GATTGGCACACACGAATTGATCCGCAGATGTCCGAATGGGGCAACCCGGCATGTTGAAGA 1168 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || | | | || ||| || ||||||||||||||||||| Sbjct 1167 CATGTCACCCAGCAATGGG---AGCAAACCCGGAGAACTGAAACATCTAAGTA 1118 >seq479046 Length=420 Score = 93.3 bits (102), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || |||||| |||||||| | || ||||||||||| ||| Sbjct 210 GGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAAAGCGGAGGG 151 Query 68 GAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || ||||| | | ||||||| ||||||||||||||| ||||| || ||| Sbjct 150 GAGCTGGCAAACGAGCTTTGATCCTCCGATATCCGAATGGGGAAACCCACCTCTTTTGAG 91 Query 127 ATAT----ATCATAACGC-TAGG---CGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178 ||| | | || | |||| ||| | ||||||| || ||||||||||||||||| Sbjct 90 GTATCCGTAACTGAATACATAGGTTACGTGAAGCGAACGCGGTGAACTGAAACATCTAAG 31 Query 179 TA 180 || Sbjct 30 TA 29 >seq789720 Length=205 Score = 84.2 bits (92), Expect = 2e-14 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||| ||||||| | | ||| ||| ||||| |||| ||||| ||||| ||| || Sbjct 18 ACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTGGTAAGCGACGAAATGCTTCG 77 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125 |||| | | | || | || ||||||||||| |||||| || |||| | | || Sbjct 78 GGGAGTTGAAAATGAGCATAGATCCGTAGATTCCCGAATAGGTTAACCTTTTTAACTGCT 137 Query 126 GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | | ||| | | |||| || | ||| ||| |||||||||||||| |||| Sbjct 138 GCTGAATC-CATGGGCAGGCAAGAGAC-AACCTGGCGAACTGAAACATCTTAGTA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471087844365