Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq1019628 87.8 2e-15
seq244347 87.8 2e-15
seq536851 86.0 6e-15
seq339089 82.4 7e-14
>seq1019628
Length=201
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||||||||| || | ||| |||||||||||| || |||||| ||||
Sbjct 142 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTATGGCCGACTTTCGTCCCTG 83
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||| |||||||||| ||| |||| |||||||
Sbjct 82 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 37
>seq244347
Length=200
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||||||||| || | ||| |||||||||| | || |||||| ||||
Sbjct 2 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTG 61
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || ||| |||||||||| ||| ||||||||||||
Sbjct 62 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCATTGCACT 107
>seq536851
Length=471239
Score = 86.0 bits (94), Expect = 6e-15
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
||||||||||||||||||| || | ||| |||||||||| | || |||||| |||||
Sbjct 349223 TTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGC 349282
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|||| || ||| |||||||||| ||| |||| |||||||
Sbjct 349283 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 349327
>seq339089
Length=923835
Score = 82.4 bits (90), Expect = 7e-14
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
||||| ||||||||||||| || | |||| |||||||||| | || |||||| |||||
Sbjct 261637 TTGAGTGATGGCCCTTCCACTCGGCACCATCGGATCACTAAGGCCGACTTTCGTCCCTGC 261578
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
| || || ||| |||||||||| ||| |||| |||||||
Sbjct 261577 TTGATGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 261533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467926180980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |