Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq1019628 87.8 2e-15 seq244347 87.8 2e-15 seq536851 86.0 6e-15 seq339089 82.4 7e-14 >seq1019628 Length=201 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||||| || |||||| |||| Sbjct 142 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTATGGCCGACTTTCGTCCCTG 83 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||| ||||||| Sbjct 82 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 37 >seq244347 Length=200 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||||| |||| Sbjct 2 GTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTG 61 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || ||| |||||||||| ||| |||||||||||| Sbjct 62 CTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCATTGCACT 107 >seq536851 Length=471239 Score = 86.0 bits (94), Expect = 6e-15 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||||||||| || | ||| |||||||||| | || |||||| ||||| Sbjct 349223 TTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGC 349282 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || ||| |||||||||| ||| |||| ||||||| Sbjct 349283 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 349327 >seq339089 Length=923835 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||| ||||||||||||| || | |||| |||||||||| | || |||||| ||||| Sbjct 261637 TTGAGTGATGGCCCTTCCACTCGGCACCATCGGATCACTAAGGCCGACTTTCGTCCCTGC 261578 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || || ||| |||||||||| ||| |||| ||||||| Sbjct 261577 TTGATGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 261533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467926180980