Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq363 224 4e-56 >seq363 Length=7842 Score = 224 bits (248), Expect = 4e-56 Identities = 245/318 (77%), Gaps = 17/318 (5%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||||||||||| || | | ||| |||||||||||| |||||||||||||||||||||| Sbjct 4443 AGGATGCTGGCAGAAGGTGTCTAATCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAAC 4502 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTG---CGC--GTAA--TGAAAG-TG--AA- 488 || |||||||| ||||| ||| ||| || ||| |||| ||| | || || Sbjct 4503 ATGTATGCGAGCTGGTGGGTTGCAAGCCCATGAAGCGCAAGTAACCTGACTGGTGCCAAG 4562 Query 489 --CGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCT-TCGGATGGA 545 ||| || | |||| | ||| |||||||| | | || || | | | || Sbjct 4563 GCCGGGCGTTGCCGCCCG---GCCCGCAGCATCGACCAACCTGGAGGTTTCTACCAAGGG 4619 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| | Sbjct 4620 TTTGAGTACGAGCATACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCG 4679 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||||||||||||||||||||||| || || ||| ||||||||||| | || Sbjct 4680 AAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGG 4739 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 4740 ACTTGGGTATAGGGGCGA 4757 Score = 161 bits (178), Expect = 4e-37 Identities = 136/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || ||||||| | ||||| ||||||| Sbjct 4091 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAATCCCATCTAAGGCTAAAT 4150 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | | ||||||||||||| ||||||| | || ||||||||||||| |||||| || Sbjct 4151 ATCGACGGGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGAACTTTGAAA 4210 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||| |||||| | |||||||||||| ||||||||| ||| || Sbjct 4211 AGAGAGTCAAAAAGTGCTTGAAATTGTTGAGAGGGAAGCGATTGGAA 4257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079991977700