Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq260 250 6e-64 seq336 145 2e-32 >seq260 Length=66046 Score = 250 bits (276), Expect = 6e-64 Identities = 306/413 (74%), Gaps = 11/413 (3%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 23036 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 23095 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGG--- 119 |||||||| |||||| | |||||||||||||| | ||| |||| ||| | || Sbjct 23096 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGG---TTGTTTAAAA-AGTATT 23151 Query 120 -TGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGT 178 ||| ||| |||||||||| || ||| ||| ||||||| || Sbjct 23152 CTGTCAAAGATTAGGGCTTAACCCTAGATAGGCAGAATAAACTTTTAAGCTAGAGTTTGG 23211 Query 179 CAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCA 238 ||||| | |||||||| ||| ||| ||||||||||||||||| |||||||||||| Sbjct 23212 TAGAGGCAGAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCA 23271 Query 239 ATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAA 298 | |||||||||| | ||||| || ||| || || | ||||||||| ||||||||| Sbjct 23272 AAGGCGAAGGCACTCTGCTGGGCCAATACTAACACTGAGAGACGAAAGCGAGGGGAGCAA 23331 Query 299 ACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGA 356 | ||||||||| ||| ||||||| |||| ||||| || |||||| |||||| | | Sbjct 23332 ATGGGATTAGATTCCCCAGTAGTCCTCGCCGTAAACAATGGAAACTAGGTGTTGGGTGTA 23391 Query 357 TTTACTTCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 | | || || ||| |||||||||||| | ||||| ||||||||||| || Sbjct 23392 TAAAAATCATTCAGTATCGTAGCTAACGCATTAAGTTTCCCGCCTGGGGAGTA 23444 >seq336 Length=57273 Score = 145 bits (160), Expect = 2e-32 Identities = 237/337 (70%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 ||| || |||||||| | |||||||||||||||||||||||| | || || ||||||| Sbjct 50065 AATTAGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTAT 50124 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTG---------TA-AGACAGGTG 121 ||||||| | ||||||||||||||||| || ||| | || | |||| | Sbjct 50125 TCGGAATGATTGGGCGTAAAGCGTGCGTAGATTGTTTTTACTTATTTCTATACACAGATA 50184 Query 122 TGAA-ATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 | || ||| || | | |||| | | | | | | ||| |||| | | Sbjct 50185 TAAATATCATTTATATTGATA-GAAAATT---TATATAAATAAAA-ACTTGAGTATTTAT 50239 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 ||| | || ||||||| | |||| || |||| || ||| | ||||||| ||| | Sbjct 50240 TAGGAGAGTAGAATTCCTGGAGTAGAGGTAAAATTTGTTGATCTCAGGAGGAATACCTAA 50299 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||| ||||| | |||| | | |||| || | | ||||||||||||||| ||| || Sbjct 50300 AGCGAAAGCAGCTCTCTGGTAAAGCACTAACATTGAGGCACGAAAGCGTGGGTAGCGAAG 50359 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||| |||||||||||| | ||| || Sbjct 50360 AGGATTAGATACCCTTGTAGTCCACGCCGTCAACTAT 50396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289595176896