Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq260 250 6e-64
seq336 145 2e-32
>seq260
Length=66046
Score = 250 bits (276), Expect = 6e-64
Identities = 306/413 (74%), Gaps = 11/413 (3%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 23036 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 23095
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGG--- 119
|||||||| |||||| | |||||||||||||| | ||| |||| ||| | ||
Sbjct 23096 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGG---TTGTTTAAAA-AGTATT 23151
Query 120 -TGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGT 178
||| ||| |||||||||| || ||| ||| ||||||| ||
Sbjct 23152 CTGTCAAAGATTAGGGCTTAACCCTAGATAGGCAGAATAAACTTTTAAGCTAGAGTTTGG 23211
Query 179 CAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCA 238
||||| | |||||||| ||| ||| ||||||||||||||||| ||||||||||||
Sbjct 23212 TAGAGGCAGAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCA 23271
Query 239 ATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAA 298
| |||||||||| | ||||| || ||| || || | ||||||||| |||||||||
Sbjct 23272 AAGGCGAAGGCACTCTGCTGGGCCAATACTAACACTGAGAGACGAAAGCGAGGGGAGCAA 23331
Query 299 ACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGA 356
| ||||||||| ||| ||||||| |||| ||||| || |||||| |||||| | |
Sbjct 23332 ATGGGATTAGATTCCCCAGTAGTCCTCGCCGTAAACAATGGAAACTAGGTGTTGGGTGTA 23391
Query 357 TTTACTTCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408
| | || || ||| |||||||||||| | ||||| ||||||||||| ||
Sbjct 23392 TAAAAATCATTCAGTATCGTAGCTAACGCATTAAGTTTCCCGCCTGGGGAGTA 23444
>seq336
Length=57273
Score = 145 bits (160), Expect = 2e-32
Identities = 237/337 (70%), Gaps = 16/337 (5%)
Strand=Plus/Plus
Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71
||| || |||||||| | |||||||||||||||||||||||| | || || |||||||
Sbjct 50065 AATTAGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTAT 50124
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTG---------TA-AGACAGGTG 121
||||||| | ||||||||||||||||| || ||| | || | |||| |
Sbjct 50125 TCGGAATGATTGGGCGTAAAGCGTGCGTAGATTGTTTTTACTTATTTCTATACACAGATA 50184
Query 122 TGAA-ATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180
| || ||| || | | |||| | | | | | | ||| |||| | |
Sbjct 50185 TAAATATCATTTATATTGATA-GAAAATT---TATATAAATAAAA-ACTTGAGTATTTAT 50239
Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240
||| | || ||||||| | |||| || |||| || ||| | ||||||| ||| |
Sbjct 50240 TAGGAGAGTAGAATTCCTGGAGTAGAGGTAAAATTTGTTGATCTCAGGAGGAATACCTAA 50299
Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300
||||| ||||| | |||| | | |||| || | | ||||||||||||||| ||| ||
Sbjct 50300 AGCGAAAGCAGCTCTCTGGTAAAGCACTAACATTGAGGCACGAAAGCGTGGGTAGCGAAG 50359
Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||| |||||||||||| | ||| ||
Sbjct 50360 AGGATTAGATACCCTTGTAGTCCACGCCGTCAACTAT 50396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289595176896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |