Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq260 145 1e-32 seq336 131 2e-28 >seq260 Length=66046 Score = 145 bits (160), Expect = 1e-32 Identities = 182/247 (74%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || ||| | | ||||| | ||| || Sbjct 26360 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTAC-GACTTTGCGGA 26302 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || || ||||| ||| | | | || Sbjct 26301 GTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCGGCCAAAA---GATGAA 26245 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | ||||| | |||||||||||||||||||||||||||| ||||||||||| | Sbjct 26244 AAA-----TCACC--CCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGT 26192 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | |||| |||| |||||||| | ||||||||||||| Sbjct 26191 TCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACCTACCTACCTGTGTCGGTT 26132 Query 242 TACGGTA 248 || |||| Sbjct 26131 TATGGTA 26125 >seq336 Length=57273 Score = 131 bits (144), Expect = 2e-28 Identities = 173/235 (74%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| || ||||| ||| |||||| ||| ||| | |||| Sbjct 1503 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACCG-CTTTGCAGAGTCCTG 1561 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAGCT-CAACAC 124 |||||||| |||||||||| | | | ||||| | ||| ||||| | | || |||| Sbjct 1562 TGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACCACTTAAATACCTATAACAG 1621 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 || ||| || ||| | |||| |||||||||||||| | || |||||||| |||| Sbjct 1622 GTATTTCTACA----TGGTCCTCCTTATCCCGAAGTTACGGAGGCAATTTGCCGAGTTCC 1677 Query 185 TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 || | | |||| | | |||||||||||| ||||| || || ||||||| Sbjct 1678 TTTAATATGGTTCTCTC-TACGCCTTAGTATATTCTACTCATCCTCCAGTGTCGG 1731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694397484102