Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq260 145 1e-32
seq336 131 2e-28
>seq260
Length=66046
Score = 145 bits (160), Expect = 1e-32
Identities = 182/247 (74%), Gaps = 11/247 (4%)
Strand=Plus/Minus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| |||||| ||| ||||||||||||| || ||| | | ||||| | ||| ||
Sbjct 26360 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTAC-GACTTTGCGGA 26302
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121
| ||||||||||| ||||||||||| | || || ||||| ||| | | | ||
Sbjct 26301 GTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCGGCCAAAA---GATGAA 26245
Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181
| ||||| | |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 26244 AAA-----TCACC--CCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGT 26192
Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
|||||| | |||| | || | |||| |||| |||||||| | |||||||||||||
Sbjct 26191 TCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACCTACCTACCTGTGTCGGTT 26132
Query 242 TACGGTA 248
|| ||||
Sbjct 26131 TATGGTA 26125
>seq336
Length=57273
Score = 131 bits (144), Expect = 2e-28
Identities = 173/235 (74%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
||||| ||||||||||| ||||| || ||||| ||| |||||| ||| ||| | ||||
Sbjct 1503 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACCG-CTTTGCAGAGTCCTG 1561
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAGCT-CAACAC 124
|||||||| |||||||||| | | | ||||| | ||| ||||| | | || ||||
Sbjct 1562 TGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACCACTTAAATACCTATAACAG 1621
Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184
|| ||| || ||| | |||| |||||||||||||| | || |||||||| ||||
Sbjct 1622 GTATTTCTACA----TGGTCCTCCTTATCCCGAAGTTACGGAGGCAATTTGCCGAGTTCC 1677
Query 185 TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
|| | | |||| | | |||||||||||| ||||| || || |||||||
Sbjct 1678 TTTAATATGGTTCTCTC-TACGCCTTAGTATATTCTACTCATCCTCCAGTGTCGG 1731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694397484102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |