Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq260 96.9 3e-18 seq336 89.7 5e-16 >seq260 Length=66046 Score = 96.9 bits (106), Expect = 3e-18 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| |||||||||||| |||||||||| |||| ||||| || ||| || | Sbjct 26265 ACCAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCCGCAAAGTCGTAAGACAACAT 26324 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| ||||||||||||||| Sbjct 26325 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 26360 >seq336 Length=57273 Score = 89.7 bits (98), Expect = 5e-16 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGAC 128 |||||||||| ||||||||||| |||||||||| | || |||||||||||| |||| Sbjct 1580 CGACTGTTTAATAAAAACACAGGACTCTGCAAAGCGGTAACGCGACGTATAGGGTCTGAC 1521 Query 129 GCCTGCCCGGTGCCGGAAGGTTAATTG 155 |||||||||||| |||| |||| || Sbjct 1520 ACCTGCCCGGTGCTGGAAACTTAAGTG 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476798272494