Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq260 96.9 3e-18
seq336 89.7 5e-16
>seq260
Length=66046
Score = 96.9 bits (106), Expect = 3e-18
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||||| |||||||||||| |||||||||| |||| ||||| || ||| || |
Sbjct 26265 ACCAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCCGCAAAGTCGTAAGACAACAT 26324
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|| ||| |||||||||||| |||||||||||||||
Sbjct 26325 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 26360
>seq336
Length=57273
Score = 89.7 bits (98), Expect = 5e-16
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 69 CGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGAC 128
|||||||||| ||||||||||| |||||||||| | || |||||||||||| ||||
Sbjct 1580 CGACTGTTTAATAAAAACACAGGACTCTGCAAAGCGGTAACGCGACGTATAGGGTCTGAC 1521
Query 129 GCCTGCCCGGTGCCGGAAGGTTAATTG 155
|||||||||||| |||| |||| ||
Sbjct 1520 ACCTGCCCGGTGCTGGAAACTTAAGTG 1494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476798272494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |