Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq260 286 9e-75 seq336 104 6e-20 >seq260 Length=66046 Score = 286 bits (316), Expect = 9e-75 Identities = 312/413 (76%), Gaps = 20/413 (5%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||||||| |||||| Sbjct 26548 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCGTT 26489 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 26488 ACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 26429 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA------GCTAAC 186 | ||||||||||||||| ||||||||||| || ||||| ||| |||| Sbjct 26428 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCAAGCTTTTTCTTAAAAAAGAATAAC 26369 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||||||||||| |||||||||||| ||| ||| || ||| || | Sbjct 26368 CTACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGACT 26309 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 |||| |||| |||||||||| |||||||||||| |||||||| || || | || Sbjct 26308 TTGCGGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCG---GCCAAA 26252 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 || | || || ||||| | ||| | ||||||||||||||||||| | | Sbjct 26251 AGAT----GAAAAA-----TCACC--CCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCA 26203 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||| |||||||| ||||| |||| || ||||||||| ||||||| Sbjct 26202 TTTTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACC 26150 >seq336 Length=57273 Score = 104 bits (114), Expect = 6e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | | ||||||||| | |||||| Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 || |||||| |||||| ||||||||||||| ||| |||||||||| Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396 Score = 91.5 bits (100), Expect = 4e-16 Identities = 169/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 |||| | || |||| |||| |||||||||||| |||| |||||||||||| || | Sbjct 1486 AACCTCTCCACTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACC 1545 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 |||||||||| ||||||||||| |||||||||| | ||| | | | | ||| | Sbjct 1546 GCTTTGCAGAGTCCTGTGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACC-AC 1604 Query 304 ATGAGCTTAC--GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGG 361 | | ||| | || || ||| | | || | |||| |||||||||||||| Sbjct 1605 TTAA--ATACCTATAACAGGTATTTCTACAT----GGTCCTCCTTATCCCGAAGTTACGG 1658 Query 362 TGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 | | |||||| |||||||| |||||||| | |||||| |||| ||||| || Sbjct 1659 AGGCAATTTGCCGAGTTCCTTTAATATGGTTCTCTCTA-CGCCTTAGTATATTCTACTCA 1717 Query 422 ACC 424 || Sbjct 1718 TCC 1720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260795284608