Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq260 286 9e-75
seq336 104 6e-20
>seq260
Length=66046
Score = 286 bits (316), Expect = 9e-75
Identities = 312/413 (76%), Gaps = 20/413 (5%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||||||| ||||||||||| ||||||
Sbjct 26548 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCGTT 26489
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 26488 ACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 26429
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA------GCTAAC 186
| ||||||||||||||| ||||||||||| || ||||| ||| ||||
Sbjct 26428 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCAAGCTTTTTCTTAAAAAAGAATAAC 26369
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||||||||||||||| |||||||||||| ||| ||| || ||| || |
Sbjct 26368 CTACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGACT 26309
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
|||| |||| |||||||||| |||||||||||| |||||||| || || | ||
Sbjct 26308 TTGCGGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCG---GCCAAA 26252
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
|| | || || ||||| | ||| | ||||||||||||||||||| | |
Sbjct 26251 AGAT----GAAAAA-----TCACC--CCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCA 26203
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||||||| |||||||| ||||| |||| || ||||||||| |||||||
Sbjct 26202 TTTTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACC 26150
>seq336
Length=57273
Score = 104 bits (114), Expect = 6e-20
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || ||||||||||||||| | | ||||||||| | ||||||
Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117
|| |||||| |||||| ||||||||||||| ||| ||||||||||
Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396
Score = 91.5 bits (100), Expect = 4e-16
Identities = 169/243 (70%), Gaps = 10/243 (4%)
Strand=Plus/Plus
Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243
|||| | || |||| |||| |||||||||||| |||| |||||||||||| || |
Sbjct 1486 AACCTCTCCACTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACC 1545
Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303
|||||||||| ||||||||||| |||||||||| | ||| | | | | ||| |
Sbjct 1546 GCTTTGCAGAGTCCTGTGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACC-AC 1604
Query 304 ATGAGCTTAC--GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGG 361
| | ||| | || || ||| | | || | |||| ||||||||||||||
Sbjct 1605 TTAA--ATACCTATAACAGGTATTTCTACAT----GGTCCTCCTTATCCCGAAGTTACGG 1658
Query 362 TGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421
| | |||||| |||||||| |||||||| | |||||| |||| ||||| ||
Sbjct 1659 AGGCAATTTGCCGAGTTCCTTTAATATGGTTCTCTCTA-CGCCTTAGTATATTCTACTCA 1717
Query 422 ACC 424
||
Sbjct 1718 TCC 1720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260795284608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |