Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq260 313 5e-83 seq336 93.3 9e-17 >seq260 Length=66046 Score = 313 bits (346), Expect = 5e-83 Identities = 289/365 (79%), Gaps = 21/365 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||| ||||| |||||| Sbjct 26548 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCGTT 26489 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 26488 ACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 26429 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAG---A 183 ||||||||||||||||| || ||||||| ||| |||| || | || || | Sbjct 26428 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCAAGCTT--TTTCTTAAAAAAGAATA 26371 Query 184 TCC-----CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||||||||| |||| |||||||||||||| || ||| | ||||| ||| Sbjct 26370 ACCTACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGA 26311 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294 ||| || || |||||||||||| ||||||||||| ||||||| || |||||||| Sbjct 26310 CTTTGCGGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCGGCCAAAA 26251 Query 295 --TG-----TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 || ||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 26250 GATGAAAAATCACCCCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTT 26191 Query 348 CCTTA 352 ||||| Sbjct 26190 CCTTA 26186 >seq336 Length=57273 Score = 93.3 bits (102), Expect = 9e-17 Identities = 140/201 (70%), Gaps = 20/201 (10%) Strand=Plus/Plus Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 ||| ||||| ||||||||||||||||| ||||| ||||||| ||| || | ||| | Sbjct 1492 TCCACTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACCGCTTTG 1551 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC-----------GG 292 |||| ||||||||||| |||||||||| | |||||| | ||| Sbjct 1552 CAGAGTCCTGTGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACCACTTAAATA 1611 Query 293 CCTGTCATAG--------ACA-GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 ||| | | || ||| || | |||| |||| ||||||||| | || ||||||| Sbjct 1612 CCTATAACAGGTATTTCTACATGGTCCTCCTTATCCCGAAGTTACGGAGGCAATTTGCCG 1671 Query 344 AGTTCCTTAACAATAGTTCTC 364 |||||||| | || |||||| Sbjct 1672 AGTTCCTTTAATATGGTTCTC 1692 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||| ||| | || | ||||||| | ||||||| Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 || || ||| ||| || ||||||||||||| ||| |||||||||| Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062396026624