Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq260 313 5e-83
seq336 93.3 9e-17
>seq260
Length=66046
Score = 313 bits (346), Expect = 5e-83
Identities = 289/365 (79%), Gaps = 21/365 (6%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | ||||||| ||||| ||||||
Sbjct 26548 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCGTT 26489
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 26488 ACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 26429
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAG---A 183
||||||||||||||||| || ||||||| ||| |||| || | || || |
Sbjct 26428 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCAAGCTT--TTTCTTAAAAAAGAATA 26371
Query 184 TCC-----CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238
|| | |||||||||| |||| |||||||||||||| || ||| | ||||| |||
Sbjct 26370 ACCTACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGA 26311
Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294
||| || || |||||||||||| ||||||||||| ||||||| || ||||||||
Sbjct 26310 CTTTGCGGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTGGTCACTGCGGCCAAAA 26251
Query 295 --TG-----TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347
|| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 26250 GATGAAAAATCACCCCTTGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTT 26191
Query 348 CCTTA 352
|||||
Sbjct 26190 CCTTA 26186
>seq336
Length=57273
Score = 93.3 bits (102), Expect = 9e-17
Identities = 140/201 (70%), Gaps = 20/201 (10%)
Strand=Plus/Plus
Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243
||| ||||| ||||||||||||||||| ||||| ||||||| ||| || | ||| |
Sbjct 1492 TCCACTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGCGTTACCGCTTTG 1551
Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC-----------GG 292
|||| ||||||||||| |||||||||| | |||||| | |||
Sbjct 1552 CAGAGTCCTGTGTTTTTATTAAACAGTCGTTACTCCCTATTTTGTGCCACCACTTAAATA 1611
Query 293 CCTGTCATAG--------ACA-GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343
||| | | || ||| || | |||| |||| ||||||||| | || |||||||
Sbjct 1612 CCTATAACAGGTATTTCTACATGGTCCTCCTTATCCCGAAGTTACGGAGGCAATTTGCCG 1671
Query 344 AGTTCCTTAACAATAGTTCTC 364
|||||||| | || ||||||
Sbjct 1672 AGTTCCTTTAATATGGTTCTC 1692
Score = 91.5 bits (100), Expect = 3e-16
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||| ||| | || | ||||||| | |||||||
Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111
|| || ||| ||| || ||||||||||||| ||| ||||||||||
Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062396026624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |