Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq260 340 5e-91 seq336 230 7e-58 >seq260 Length=66046 Score = 340 bits (376), Expect = 5e-91 Identities = 393/526 (75%), Gaps = 45/526 (9%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||||||||||| |||||||||| ||||| | | |||||| Sbjct 23449 CGCAAGAGTGAAACTCAAAGGAATTGACGGGAACCCGCACAATTGGTGGGGTACGTGGTT 23508 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC----------CT----CT 112 |||||||| ||||||||||||||||||||| ||||||| || || Sbjct 23509 TAATTCGATGCAACGCGAAGAACCTTACCAGGATTTGACATGTCACTTGTTTCTTCAACT 23568 Query 113 GACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAG-----AGTGA---CAGGTGAT 164 || || || || | | ||| | || ||| ||||| |||||| | Sbjct 23569 TACTACTTTA---ATTG-GTTTTAAGC----GGAAACATTAAAAAGTGAACACAGGTGGT 23620 Query 165 GCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 224 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 23621 GCATGGCTGTCGTCAGCTCGTGTCTTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAAC 23680 Query 225 CCTTAAGCTTAGTTGC------CAT-------CATTAAGTTGGGCACTCTAAGTTGACTG 271 |||| | | |||| | | | || || || | | || | |||| Sbjct 23681 CCTTTTTTTGAATTGCTTGGCGCTTTTAAACGCTTTTAGAGAGGAAATTCAAAAT-ACTG 23739 Query 272 CCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTG 331 |||||||||| ||||||||||||| ||| |||||||| ||| |||||||||||| || Sbjct 23740 CCGGTGACAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCAGCATGCCCCTTATATCCTG 23799 Query 332 GGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 ||| |||||||||||||||||| | |||||| | ||||| |||||||| ||||| || Sbjct 23800 GGCGACACACGTGCTACAATGGCCGGAACAAAGAGAAGCGACCCCGCGAGGACAAGCTAA 23859 Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 | || ||| | ||||||||||||||| || |||||||||| || |||||| ||||| Sbjct 23860 CCTCAAAAATCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTTGGAA 23919 Query 452 TCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 || ||||||||| || |||| || || ||||||||||||| ||| Sbjct 23920 TCAATAGTAATCGCAGGTCAGCCACACTGCGGTGAATACGTTTCCG 23965 >seq336 Length=57273 Score = 230 bits (254), Expect = 7e-58 Identities = 357/503 (71%), Gaps = 23/503 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||| |||||||||||||||||| |||||| ||| Sbjct 50468 TACGGTCGCAAGATTAAAACTCAAAGGAATAGACGGGGACCCGCACAAGTGGTGGAACAT 50527 Query 61 -GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCT 119 | |||||||| |||| ||||||| | |||||||||| ||||| || || | | Sbjct 50528 CGCGGTTTAATGCGAAACAACGCGCAAAACCTTACCAGCCCTTGATATA-----ACACTT 50582 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || | ||| | || || | | | || ||||||| ||||||| ||||||| Sbjct 50583 ATATA-ATAAAATATTATAGTTTTAGAGTTTGTGTTACAGGTGTTGCATGGCTGTCGTCG 50641 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTT------AA--G 231 | ||||| ||| || ||||| |||| | | ||||| || ||||| | || | Sbjct 50642 GTTCGTGCCGTAAGGCGTTGGATTAATTTCTTTAACGAACGAAACCCCTGTTATCAATTG 50701 Query 232 CTTAG---TTGCCA-TCATTAAGT---TGGGCACTCTAAGTTGACTGCCGGTGACAAACC 284 || || || | | | ||| || | | ||| | | |||||| || | |||| Sbjct 50702 CTAAGAATTTACAAATTATTTTGTATTTCAGAACTTTGATACTACTGCCAGTCATAAACT 50761 Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 ||||||||| |||| ||||||| || ||||| |||||||| |||||||||| ||| Sbjct 50762 GGAGGAAGGAAGGGATTACGTCAAGTCCTCATGACCCTTATGGGCTGGGCTACACGTGTG 50821 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 |||||||| |||||||| | || | | ||| |||||||| ||||| || Sbjct 50822 TTACAATGGCGAATACAAAAAGATGCAATGATGAGAGTCGGAGCAAATCT-ATAAAATTC 50880 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 ||| ||| | |||||| ||||||| |||| | || ||| |||||| |||||||||| Sbjct 50881 GTCTTAGTACAGATTGTTTTCTGCAATTCGAAAACATCAAGAAGGAATCACTAGTAATCG 50940 Query 465 TAGATCAGCATGCTACGGTGAAT 487 | |||||||| || ||||||||| Sbjct 50941 TGGATCAGCACGCCACGGTGAAT 50963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503994375040