Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq260 98.7 1e-18 seq336 91.5 2e-16 >seq260 Length=66046 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 26577 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 26518 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||| ||||| ||| Sbjct 26517 -TCTCTCTCCGAGACAGCGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGGACTTATCCG 26459 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 26458 ACAAGGAATTTCGCTACCTTAGGACCGTTA 26429 >seq336 Length=57273 Score = 91.5 bits (100), Expect = 2e-16 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | ||| | || |||||||||| || | | ||||||||||||| Sbjct 263 GGGTCTTTCCGTCTACTTTGGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACTGAG 322 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | ||||||| |||||||||| |||||| ||||||||||||| Sbjct 323 ACCATATTAGAGACAGCGGAGTAATCGTTACACCATTCATGCAGGCCGGAACTTACCCGG 382 Query 145 CAAGGAATTTCGCT 158 ||| |||||||||| Sbjct 383 CAATGAATTTCGCT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198017426