Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq260 98.7 1e-18
seq336 91.5 2e-16
>seq260
Length=66046
Score = 98.7 bits (108), Expect = 1e-18
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 26577 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 26518
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
|| | | ||||||| ||| || ||||||| |||||| ||||| |||
Sbjct 26517 -TCTCTCTCCGAGACAGCGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGGACTTATCCG 26459
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 26458 ACAAGGAATTTCGCTACCTTAGGACCGTTA 26429
>seq336
Length=57273
Score = 91.5 bits (100), Expect = 2e-16
Identities = 98/134 (73%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | ||| | || |||||||||| || | | |||||||||||||
Sbjct 263 GGGTCTTTCCGTCTACTTTGGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACTGAG 322
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|| | ||||||| |||||||||| |||||| |||||||||||||
Sbjct 323 ACCATATTAGAGACAGCGGAGTAATCGTTACACCATTCATGCAGGCCGGAACTTACCCGG 382
Query 145 CAAGGAATTTCGCT 158
||| ||||||||||
Sbjct 383 CAATGAATTTCGCT 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547198017426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |