Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq260 208 2e-51 seq336 163 6e-38 >seq260 Length=66046 Score = 208 bits (230), Expect = 2e-51 Identities = 173/209 (83%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || ||||| | | |||||||||||| || ||||||||||||||| Sbjct 23006 TTTACAACCCATAGGCCTTCATCCTT-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 22949 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 22948 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 22889 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||| ||| ||| |||| | |||||||| ||| ||||| ||| Sbjct 22888 GTGGCTGATCATCCTCTCAGAACAGCTACTGATCATTGCCTTGGTATGCCTTTACCACAC 22829 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCT 210 ||||||||||||| | | | || ||||| Sbjct 22828 CAACTAGCTAATCAGGCGCAAGCCCATCT 22800 >seq336 Length=57273 Score = 163 bits (180), Expect = 6e-38 Identities = 138/170 (81%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| ||||||||||||||||||||||||||||| | | | | | | Sbjct 49933 GCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGTTACTCTAAAGTATTT 49874 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| ||| |||| |||||||| |||||| ||||| || |||| | | Sbjct 49873 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAAGATCTTTGG 49814 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||| |||| |||||| |||||||| |||||| || | |||||||| Sbjct 49813 CTTGGTAAGCCTTTACCTTACCAACTACCTAATCTTACGCAAGCTCATCT 49764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071995990720