Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq260 235 2e-59 seq336 95.1 4e-17 >seq260 Length=66046 Score = 235 bits (260), Expect = 2e-59 Identities = 342/485 (71%), Gaps = 35/485 (7%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || ||| |||||| Sbjct 25328 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGGGTTCGACTGGTATTTCAC 25269 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| | | |||||||| | || ||||||| ||| ||| ||| Sbjct 25268 CGCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACTTGGT 25209 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316 | |||| | |||| |||| ||||| |||||||| | ||||||||| || Sbjct 25208 ATCACCCAAGTTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAAAATG 25149 Query 317 ACTCA----------------TA------CGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 ||| | || |||||||||| ||||||||||||||| |||| Sbjct 25148 ACTAAATTGTAAATATTAAAATATTTGATCGCCCTATTCAGACTCGCTTTCGCTAAGGCT 25089 Query 355 ACCCCACACGGG-TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 | | |||||| ||| || | || |||| |||||||||||||| ||| Sbjct 25088 TCGGAATTTTTCCTTAACCACGCCACTTTTT-CTAAGTCGCCGGCTCATTCTTCAACAGG 25030 Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473 ||||| |||| | ||||| || |||| || | |||| ||| | | || Sbjct 25029 CACGCGGTCAGTT------TAAAAAAAAC-----CTCCCACTGTTTGTCAGCATAGGATT 24981 Query 474 TCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTC 533 ||| || |||||||||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 24980 TCATGTTCTATTTCACTCCCCTTCAGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTT 24921 Query 534 CGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAA 593 | |||||||||| | |||||||||||| |||| |||||||| | |||||||||| Sbjct 24920 CACTATCGGTCATCTAGGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGG 24861 Query 594 ATTTC 598 ||||| Sbjct 24860 ATTTC 24856 >seq336 Length=57273 Score = 95.1 bits (104), Expect = 4e-17 Identities = 177/256 (69%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCC-CCCTAGACCATCCAGT-GC 110 || ||| ||||||| ||| || ||||| | |||||| |||| ||| | ||| || Sbjct 2388 GGTATTAGGAGTTTCCTTGGATTTAGTAAGGCTTTGGGCCACCCTTACCCAGCGAGTTGC 2447 Query 111 TCTACCTCCGGGA-AGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 |||||| || | | | | | | | || |||||||| |||||| || ||||||| Sbjct 2448 TCTACCCCCTTGTTATATATATTCTAGACTTTACCTAAATAAATTTCGCAGAAAACCAGC 2507 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 |||| | |||| ||||||| ||||||||||| |||| |||| || || | || Sbjct 2508 TATCTCCGAGTTCGATTGGCTTTTCACCCCTAGTCACAAATCATTTCCGTCTATTGCCAC 2567 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||| |||||||||||| || ||| | ||||||||| |||| ||||| Sbjct 2568 AGACGTGAATTCGGTCCTCCAAAACGTGTTAGCATTTTTTCAACCTGTTCATGACTAGAT 2627 Query 290 CACTTCGCTTCGGGTC 305 |||| | |||||||| Sbjct 2628 CACTCGGTTTCGGGTC 2643 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||||||||||||||||||| || | |||||| ||| | | ||| ||||||||| Sbjct 2880 TTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGATCAAGAGTGCGTACTTAGGCTTA 2939 Query 566 ACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| | | |||| || Sbjct 2940 GAGGGTGGTCCCCCTATTTTCAAAC 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817593202176